PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023886534.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 349aa MW: 39072 Da PI: 6.2232

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023886534.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ G +W+++++ g+ R++k+c+ rw +yl XP_023886534.1 14 RGLWSPEEDEKLINYISNNGHSCWSSVPKFAGLQRCGKSCRQRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	48.3	2.3e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr+++eE l+++++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_023886534.1 67 RGRFSPEEAALIIELHGILGNK-WAQIAKQLP-GRTDNEVKNFWNT 110 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MGHHSCCDKK KVNRGLWSPE EDEKLINYIS NNGHSCWSSV PKFAGLQRCG KSCRQRWINY 60 LRPDLKRGRF SPEEAALIIE LHGILGNKWA QIAKQLPGRT DNEVKNFWNT SIRKKLISYD 120 VPAIATFPDV HFNGNFEEGL FSLNANPNWI LNSQQDQLYL PTPTPNLQGF DHGDLKLEQT 180 NFGANLVQFP PPMAPPSDSS SYDPLWSLGY QPHENFDPNQ EHQNFSSSGA TQHYIGDKFI 240 GPSIATPNHD EDPLTVPMIP NPLPMIPIPC EIINGNFCGM SYSCASRELD PLARLPYFPV 300 GCDYPYDPHV PNNHMKYMDA IMSSSLSSAS TLPALSSSQF AINPNLPSI

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MGHHSCCDKK KVNRGLWSPE EDEKLINYIS NNGHSCWSSV PKFAGLQRCG KSCRQRWINY  60
LRPDLKRGRF SPEEAALIIE LHGILGNKWA QIAKQLPGRT DNEVKNFWNT SIRKKLISYD  120
VPAIATFPDV HFNGNFEEGL FSLNANPNWI LNSQQDQLYL PTPTPNLQGF DHGDLKLEQT  180
NFGANLVQFP PPMAPPSDSS SYDPLWSLGY QPHENFDPNQ EHQNFSSSGA TQHYIGDKFI  240
GPSIATPNHD EDPLTVPMIP NPLPMIPIPC EIINGNFCGM SYSCASRELD PLARLPYFPV  300
GCDYPYDPHV PNNHMKYMDA IMSSSLSSAS TLPALSSSQF AINPNLPSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	1e-71	MYB family protein