PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023886483.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 394aa MW: 43190.7 Da PI: 6.6295

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023886483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	7.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_023886483.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.8	8.9e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_023886483.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPLTHKPKN DTLLSNDGQT KNAANLSHMA QWESARLEAE ARLVRESKLR SHSFIQQHHQ 180 LANHASSSSA STSAQPMTSR SLNVLKGWNG TSAWSKSSEG NGGLVATGIG NSDLESPTST 240 LTFSENVPPT MTGGSVGENS MPVIEFVGGA TSGSNSEVGI VKEEGEQDWK GFEYKEGMEN 300 NNHESNSLCT FRATSLHDMS ISMEASTWST SGGHVMGEDG FTNLLLNNSD DRSLSDGGGD 360 SDNAGGSDYY EDNKNYWNSI LNLVNSSPSD SPMF

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPLTHKPKN DTLLSNDGQT KNAANLSHMA QWESARLEAE ARLVRESKLR SHSFIQQHHQ  180
LANHASSSSA STSAQPMTSR SLNVLKGWNG TSAWSKSSEG NGGLVATGIG NSDLESPTST  240
LTFSENVPPT MTGGSVGENS MPVIEFVGGA TSGSNSEVGI VKEEGEQDWK GFEYKEGMEN  300
NNHESNSLCT FRATSLHDMS ISMEASTWST SGGHVMGEDG FTNLLLNNSD DRSLSDGGGD  360
SDNAGGSDYY EDNKNYWNSI LNLVNSSPSD SPMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-121	MYB family protein