PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023886247.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 306aa    MW: 32736.1 Da    PI: 9.7156
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023886247.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-063962225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G+ C+F H
  XP_023886247.1 39 KSKPCTKFFSTSGCPFGEACHFLH 62
                    7789******************** PP
2zf-CCCH25.62.2e-08106131227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ f     Ck+Gd+C+FaHg+
  XP_023886247.1 106 KTRLCNKFKSAEGCKFGDKCHFAHGE 131
                     8***********************96 PP
3zf-CCCH345e-11273297126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +f + G C +G+rC+FaHg
  XP_023886247.1 273 FKTKLCENFTK-GSCTFGERCHFAHG 297
                     69*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MEYGGGRKRF RPEAALNGNG GFKKSKPEME SFPTGIGSKS KPCTKFFSTS GCPFGEACHF  60
LHYVPGGIKV VSQMMNVAGN PTLPQSARNS AAPPSFPDGS SPPAVKTRLC NKFKSAEGCK  120
FGDKCHFAHG EWELGKPTAP SYEDPRAMGP MPGRMGGRVE SHPSNHHQSS HRAMASFGTS  180
ATAKILVDAS LTGAIIGKNG VNSKHICRVT GAKLSIKEHD SDPTRRNIEL EGTLDQIDQA  240
SAMVQELIAN VRATSGPPMR NHATTASAPA NNFKTKLCEN FTKGSCTFGE RCHFAHGVEE  300
LRKTGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-53C3H family protein