PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023885965.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 225aa    MW: 25986.4 Da    PI: 7.0447
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023885965.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1961115357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     k+ ++t++ql+ Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+
  XP_023885965.1  61 KKKRLTSDQLDSLERSFQEEIKLDPDRKIKLSKELGLQPRQIAVWFQNRRARWKN 115
                     56779************************************************95 PP

2HD-ZIP_I/II118.24.5e-3860151192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekk+rl+++q+ +LE+sF+ee kL+p+rK +l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk++yda+++e+ +L++ev +L++ l+
  XP_023885965.1  60 EKKKRLTSDQLDSLERSFQEEIKLDPDRKIKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDVLKQEYDAISREKLKLQEEVMKLKAMLQ 151
                     69**************************************************************************************9887 PP

Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MDWTGSLRPF VPRPEPSLNF LYNYNCDPYQ GMEVKHPGMV DLGHEMLPAM EKNNFGSCQE  60
KKKRLTSDQL DSLERSFQEE IKLDPDRKIK LSKELGLQPR QIAVWFQNRR ARWKNKQLEH  120
LYDVLKQEYD AISREKLKLQ EEVMKLKAML QREQAARKPV STGYTEITGE ETVESTSVAI  180
NGCNNKPQGT GHHQIADYNF LFSVDEYNPV ASSPAYWAGL PSYPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16190KKKRLTSDQLDSLERSFQEEIKLDPDRKIK
2109117RRARWKNKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.15e-59HD-ZIP family protein