PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023885620.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

SBP

Protein Properties

Length: 1035aa MW: 114537 Da PI: 7.5965

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023885620.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ XP_023885620.1 148 VCQVQDCRADLSNAKDYHRRHKVCDVHSKASKALVGNIMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNRRRRKTHP 225 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1035 aa Download sequence
MEAQFGGKAN QFFGPVVPDL KAVGKKSLEW DLNDWKWDGD LFRASPLNSA PTDCRSRQLF 60 PVGTEIPENV VLSNSMSSGS DDVNPANGVG RRELEKRRRA VAVEDEELND EDGSLNLKLG 120 GQVYPIMEGE LKSGKKTKIV GNSSNRAVCQ VQDCRADLSN AKDYHRRHKV CDVHSKASKA 180 LVGNIMQRFC QQCSRFHALQ EFDEGKRSCR RRLAGHNRRR RKTHPDTVVN GGSLNAERGS 240 SYLLISLLRI LSNLHSNGSD QNKDQDLLSH LLKNLASLAG TVDGRNISAL LEGSQVLLNA 300 GTSDGAPQKV TDVTPNGSEP SRPFSSALKM DDGINIHDHP RPMGKCVTVS ASDVAQKRIS 360 SDDAGGRHVQ ALSGLQHMNP PPSKDGLPSK SISETTNGRI KFNNIDLNNL CDDSEGHEEN 420 IGKSHPPVNS GTGLLGHPLW VQHDSLKSSP PQTSGNSDST SSQSPSSSSG EAQVRTDRIV 480 FKLFGKDPND FPLVLRTQIL DWLSHSPTDI ESYIRPGCII LTIYLRLEKS TWEELCCDLG 540 SYLRELLDAS NDSFWRTGWV YTRVRHSVAF MYNGQVVLDT PLPLKNQKSC RISSIKPIAV 600 SVSERVQFVV KGCNLFRSSA RLLCALEGKY LIQETCNELM DSADAAIEHN ELQCLSFPCS 660 IPNVTGRGFI EVEDHGLSSS FFPFIVAEQE VCSEICMLEG AIEVVETADD IQRVPALLEA 720 KTQALDFIHE MGWLLHRSHV KFRLGHMDPN QDLFPFKRFK WLMEFSMDHD WCAVVKKLLG 780 ILFEGAVGTG EHPSVELALL DLGLVHRAVR RNCRPMVELL LRFVPDKVLD KTGSQGKQQV 840 DKGINGFLFK PDILGPAGLT PLHIAASKEG SENVLDALTD DPGLVGIKAW KSARDSTGLT 900 PNDYACLRGY YSYIHLVQKK ISNKSENSHV VLDIPGALLD CNTKWKQSDR HKLSKVASLQ 960 TEKVEMGVSC RHCMVCEQKP AYGNMRRSLV YKPAMLSMVT IAAVCVCVAL LFKSSPQVLY 1020 VFRPFRWELL KYGSS

Sequence ? help Back to Top

Protein Sequence Length: 1035 aa Download sequence

MEAQFGGKAN QFFGPVVPDL KAVGKKSLEW DLNDWKWDGD LFRASPLNSA PTDCRSRQLF  60
PVGTEIPENV VLSNSMSSGS DDVNPANGVG RRELEKRRRA VAVEDEELND EDGSLNLKLG  120
GQVYPIMEGE LKSGKKTKIV GNSSNRAVCQ VQDCRADLSN AKDYHRRHKV CDVHSKASKA  180
LVGNIMQRFC QQCSRFHALQ EFDEGKRSCR RRLAGHNRRR RKTHPDTVVN GGSLNAERGS  240
SYLLISLLRI LSNLHSNGSD QNKDQDLLSH LLKNLASLAG TVDGRNISAL LEGSQVLLNA  300
GTSDGAPQKV TDVTPNGSEP SRPFSSALKM DDGINIHDHP RPMGKCVTVS ASDVAQKRIS  360
SDDAGGRHVQ ALSGLQHMNP PPSKDGLPSK SISETTNGRI KFNNIDLNNL CDDSEGHEEN  420
IGKSHPPVNS GTGLLGHPLW VQHDSLKSSP PQTSGNSDST SSQSPSSSSG EAQVRTDRIV  480
FKLFGKDPND FPLVLRTQIL DWLSHSPTDI ESYIRPGCII LTIYLRLEKS TWEELCCDLG  540
SYLRELLDAS NDSFWRTGWV YTRVRHSVAF MYNGQVVLDT PLPLKNQKSC RISSIKPIAV  600
SVSERVQFVV KGCNLFRSSA RLLCALEGKY LIQETCNELM DSADAAIEHN ELQCLSFPCS  660
IPNVTGRGFI EVEDHGLSSS FFPFIVAEQE VCSEICMLEG AIEVVETADD IQRVPALLEA  720
KTQALDFIHE MGWLLHRSHV KFRLGHMDPN QDLFPFKRFK WLMEFSMDHD WCAVVKKLLG  780
ILFEGAVGTG EHPSVELALL DLGLVHRAVR RNCRPMVELL LRFVPDKVLD KTGSQGKQQV  840
DKGINGFLFK PDILGPAGLT PLHIAASKEG SENVLDALTD DPGLVGIKAW KSARDSTGLT  900
PNDYACLRGY YSYIHLVQKK ISNKSENSHV VLDIPGALLD CNTKWKQSDR HKLSKVASLQ  960
TEKVEMGVSC RHCMVCEQKP AYGNMRRSLV YKPAMLSMVT IAAVCVCVAL LFKSSPQVLY  1020
VFRPFRWELL KYGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein