PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023885612.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 756aa    MW: 83090.8 Da    PI: 5.7012
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023885612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.1e-2155110156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k +++t++q++eLe +F+++++p++++r eL++klgL+ +qVk+WFqNrR+++k
  XP_023885612.1  55 KKKYHRHTPNQIQELEGFFKECPHPDEKQRLELSRKLGLEIKQVKFWFQNRRTQMK 110
                     79999************************************************999 PP
2START183.41.2e-572644862205
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la++a++el+k+a+ ++ +W ks     e +n++e+++ f++  +     + +e+ r++g+v+m++  lve+l+d + +W+e+++    +a+t++
  XP_023885612.1 264 LALTAMDELIKMAQPDSSLWIKSLdgrkETLNQEEYVRAFSPCIGtkpvgFVTETTRDTGMVIMNSLALVETLMDEG-RWKEMFPciiaRASTID 357
                     6899*************************************998899******************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                      is+g      galq+m aelq+lsp v+ R   f+Ry++q+ +g+w++vdvS+d   + ++ +++v +++lpSg+++++++ng+skvtw+eh +
  XP_023885612.1 358 LISNGiagtknGALQVMHAELQVLSPFVSvRQLKFLRYCKQQAEGVWAVVDVSIDISIESTNMHPFVNCRRLPSGCVVQDMPNGYSKVTWIEHSE 452
                     ********************************************************999999********************************* PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqce 205
                     ++++ +h+l++++++ g+ +ga++wvatlqrq e
  XP_023885612.1 453 YNESGIHELYQPFIRAGMGFGAQRWVATLQRQSE 486
                     *******************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    
MEGQGGEMAL MGENYDPGMV GRLREDGYES RSGSDNVEGS GDDQEAGNDQ GPAKKKKYHR  60
HTPNQIQELE GFFKECPHPD EKQRLELSRK LGLEIKQVKF WFQNRRTQMK TQLERHENVI  120
LRQENDKLRA ENTLMRDAMA NPVCSNCGGP AIPGQISFEE HQLRIENARL KDELNRICAL  180
ANKFLGRPLS SLATSIPLPS STSGLELGVG RNGIGALSSM GAPLPMGLDL GDGIMGASAM  240
PLIKPPMSFR GNEIPMDGSM FMDLALTAMD ELIKMAQPDS SLWIKSLDGR KETLNQEEYV  300
RAFSPCIGTK PVGFVTETTR DTGMVIMNSL ALVETLMDEG RWKEMFPCII ARASTIDLIS  360
NGIAGTKNGA LQVMHAELQV LSPFVSVRQL KFLRYCKQQA EGVWAVVDVS IDISIESTNM  420
HPFVNCRRLP SGCVVQDMPN GYSKVTWIEH SEYNESGIHE LYQPFIRAGM GFGAQRWVAT  480
LQRQSEFLAI LMSSTFPLED HTTLSPAGKR SMLKLAQRMT DKFCSGVCAS TTHKWDNLRL  540
GNVGENVRVM TRRNLDDPGE PHGIVVSAAT SVWMPVSQQG LFDFLRDDRS RSQWDILCVG  600
RPIQEMIHIA KGQKQGNCVS LLRGNSTNES ESNMLILQET WTDASGSVVV YAPVDAPSIN  660
VVMSGGDSTY VALLPSGFSI LPDDQSFFGG PQNCNGTVIK EDNNGCDGSG GCLLTVGFQI  720
LINSQPAAKL TVESVETVNN LISCTIQKIK AALKIP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein