PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023885533.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 497aa MW: 53639.5 Da PI: 8.1485

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023885533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.3	1.8e-15	319	364	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ L++l+P++ K +Ka++L +++eY+k+Lq XP_023885533.1 319 HNQSERKRRDKINQRMKALQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 364 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MSQCVPSWDF DENPSHIPRL SLRSNSNSTA PDVPMLDYEV AELTWVNGQL SMHGLGQPRG 60 PVKPIPSTSS LAKYNTWDKP RASGTLESIV NQATLIPQNH HHHHRNHNSD NQGQKPRSFH 120 GGGGSGSDMV QWFHHRAAVA TTTSATMTMD ALVPCSNHTD DHGGSGTGVV GCSTRVGSCS 180 GPVGAGTMMH DQDENVIIER ANKEARVAVP AAAAAAAAPE WSSRDQSVSG SATCGRDSQH 240 VTLDTCERDL GVGLTSTSLC SMENTSPGKP CTKATTTGDD HDSVCHSRLQ REARDVVDKK 300 KSSAKSSVST KRSRAAAIHN QSERKRRDKI NQRMKALQKL VPNSSKTDKA SMLDEVIEYL 360 KQLQAQVQMM SRMSMPPMML PMAMQQQLQM SMMAPMGMGM GMGMGLGMGM DMNNINRSNI 420 TGISPVLHPT AFMPMTSWDA GSGDRIQATS PAVMADPFST FLACQSQPMT MDAYSRMAAA 480 MYQQQQLHQP PPSSSKS

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MSQCVPSWDF DENPSHIPRL SLRSNSNSTA PDVPMLDYEV AELTWVNGQL SMHGLGQPRG  60
PVKPIPSTSS LAKYNTWDKP RASGTLESIV NQATLIPQNH HHHHRNHNSD NQGQKPRSFH  120
GGGGSGSDMV QWFHHRAAVA TTTSATMTMD ALVPCSNHTD DHGGSGTGVV GCSTRVGSCS  180
GPVGAGTMMH DQDENVIIER ANKEARVAVP AAAAAAAAPE WSSRDQSVSG SATCGRDSQH  240
VTLDTCERDL GVGLTSTSLC SMENTSPGKP CTKATTTGDD HDSVCHSRLQ REARDVVDKK  300
KSSAKSSVST KRSRAAAIHN QSERKRRDKI NQRMKALQKL VPNSSKTDKA SMLDEVIEYL  360
KQLQAQVQMM SRMSMPPMML PMAMQQQLQM SMMAPMGMGM GMGMGLGMGM DMNNINRSNI  420
TGISPVLHPT AFMPMTSWDA GSGDRIQATS PAVMADPFST FLACQSQPMT MDAYSRMAAA  480
MYQQQQLHQP PPSSSKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	323	328	ERKRRD
2	324	329	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	4e-71	bHLH family protein