PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023885143.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 355aa MW: 39630.3 Da PI: 6.2897

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023885143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G g+W+++++ g+ R++k+c++rw +yl XP_023885143.1 14 RGLWSPEEDEKLINYISNYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	46.1	1.1e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ XP_023885143.1 67 RGSFSPQEAALIIELHGILGNK-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS NYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHGILGNKWA QIAKHLPGRT DNEVKNFWNS SIKKKLISHD 120 VPTIATYPDM HYNGNNEEGF FSLNVNPNWI LSSQQDHLYL PTPTPMLQGF DHGDLKLEQT 180 NYGANLVQFP PPMAPPSNSS SYDPLWSLGY QPHGQFDPNQ EQQNFSTSGA TQHYIGDKLI 240 GPSISAPHYD DEDPLTSMIP KPCDEIISGN CCGMFCSCAS QDHDPLARLP YFPAGCNYPH 300 DTQVPNNHME YMDAIMSSSS SYSSASSLSP LSSGQFVTNS NLHSSETSLE NIMFL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS NYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHGILGNKWA QIAKHLPGRT DNEVKNFWNS SIKKKLISHD  120
VPTIATYPDM HYNGNNEEGF FSLNVNPNWI LSSQQDHLYL PTPTPMLQGF DHGDLKLEQT  180
NYGANLVQFP PPMAPPSNSS SYDPLWSLGY QPHGQFDPNQ EQQNFSTSGA TQHYIGDKLI  240
GPSISAPHYD DEDPLTSMIP KPCDEIISGN CCGMFCSCAS QDHDPLARLP YFPAGCNYPH  300
DTQVPNNHME YMDAIMSSSS SYSSASSLSP LSSGQFVTNS NLHSSETSLE NIMFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	3e-81	MYB family protein