PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023884643.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 477aa MW: 53749.4 Da PI: 5.4889

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023884643.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.8	1.9e-13	275	321	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR+++N+++ Lr+l+P++ +K + a+++ A+eYIk+L XP_023884643.1 275 TKHFATERHRRQHLNQKYTALRSLVPNP-----TKADRASVVGDAIEYIKEL 321 68************************.....9**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MYEETACFDP NPMTEGTISA DGFSVPNNNF EVRLSMEELS YHHHNNHTPP CHEDVAMDME 60 LQQHLAFNID NNNNNNNNNT NNTTTNLNNT HLIDNSYNLH EMQDMDSFNY HQQQQHQIDI 120 QNGHQGFDCS AYPATTPDLL NLFNMPRCSA SSFMPNSSIS FSNPPLQNPT NNYPASLGFL 180 GGEVPTVTDS PSGGSAFYDP VFHLNHLPQQ PPLFRELFQS LPHGYTLPGS RNGSLFGTTG 240 VVVDDRDGCV YQDDGDVRQF ENVLEFTGKA RDGETKHFAT ERHRRQHLNQ KYTALRSLVP 300 NPTKADRASV VGDAIEYIKE LLRTVNELKL LVEKKRCGRE RSKRHKTESE YESGDLENCS 360 MKPHGGDPDQ SYNGSLRSSW LQRKSKDTEV DVRIIDDEVT IKLVQRKNNC LLFVSKVLDD 420 LQLDLHHVAG GHIGDFYSFL FNTKIYEGSS VYASAIANKL IEVVDRQCAA IQPTSSC

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MYEETACFDP NPMTEGTISA DGFSVPNNNF EVRLSMEELS YHHHNNHTPP CHEDVAMDME  60
LQQHLAFNID NNNNNNNNNT NNTTTNLNNT HLIDNSYNLH EMQDMDSFNY HQQQQHQIDI  120
QNGHQGFDCS AYPATTPDLL NLFNMPRCSA SSFMPNSSIS FSNPPLQNPT NNYPASLGFL  180
GGEVPTVTDS PSGGSAFYDP VFHLNHLPQQ PPLFRELFQS LPHGYTLPGS RNGSLFGTTG  240
VVVDDRDGCV YQDDGDVRQF ENVLEFTGKA RDGETKHFAT ERHRRQHLNQ KYTALRSLVP  300
NPTKADRASV VGDAIEYIKE LLRTVNELKL LVEKKRCGRE RSKRHKTESE YESGDLENCS  360
MKPHGGDPDQ SYNGSLRSSW LQRKSKDTEV DVRIIDDEVT IKLVQRKNNC LLFVSKVLDD  420
LQLDLHHVAG GHIGDFYSFL FNTKIYEGSS VYASAIANKL IEVVDRQCAA IQPTSSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	4e-78	bHLH family protein