PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023884520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 287aa    MW: 32240.4 Da    PI: 8.5615
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023884520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-19142196256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq  +Le+ F+++ +++ +++++LA+kl+L  rqV vWFqNrRa+ k
  XP_023884520.1 142 RKKLRLTKEQSAILEDNFKEHATLNPKQKQDLAHKLNLRPRQVEVWFQNRRARTK 196
                     78889************************************************98 PP

2HD-ZIP_I/II121.44.5e-39142230190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl+keq+++LE++F+e+ +L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en++L+ke +eL+ +
  XP_023884520.1 142 RKKLRLTKEQSAILEDNFKEHATLNPKQKQDLAHKLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCERLTDENKKLQKELQELK-S 230
                     69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MGPDDVCNAG LALALGSHDK QENHDHLQPD HHQEKNKKKR KKKKFSLKYD HLFPSLTLGP  60
SDETSYTYQL ATTKKEAGKA VLGGDSVDYL PNKQASSLSA VSSFSNSSSI KRERELSGGE  120
EEVEVERVSS RVSDEDEEAS PRKKLRLTKE QSAILEDNFK EHATLNPKQK QDLAHKLNLR  180
PRQVEVWFQN RRARTKLKQT EVDCELLKKC CERLTDENKK LQKELQELKS LKLAAPFYMQ  240
LPAATLTMCP SCERICNGGD GSSTSPFSIG PSKPHFFNPF THPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13643NKKKRKKK
23743KKKRKKK
33844KKKRKKK
43842KKRKK
5191199RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-64HD-ZIP family protein