PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023884289.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 322aa    MW: 36186.6 Da    PI: 5.721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023884289.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.8e-152269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
   XP_023884289.1 22 KGLWSPEEDDKLMNYMMNNGQGCWSDVARNAGLQRCGKSCRLRWINYL 69
                     678*******************************************97 PP
2Myb_DNA-binding49.41.1e-1575118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ l+++++ +lG++ W+ Ia++++ gRt++++k++w++
   XP_023884289.1  75 RGAFSPQEEALIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 118
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MRKPELSSVG KNNQVNNNKL RKGLWSPEED DKLMNYMMNN GQGCWSDVAR NAGLQRCGKS  60
CRLRWINYLR PDLKRGAFSP QEEALIIHLH SLLGNRWSQI AARLPGRTDN EIKNFWNSTI  120
KKRLKNFSST PSPNTSDSSS PKDVMGGLIS MQEQGIMPLY LDSSSSTTNS MQAMTLNHMI  180
DPLPMIHHGL NMSNNASGYF NAAPQYMTQI GVNGDSFYGG NGVFGGADMG VDGELFVPPL  240
ESISIEENVK TENMYNKRTM NNNTSNNLNN ISNCSNNNNR AENLARVGNY WEGEELRMGE  300
EWDLEELMKD VPSFPLLDFQ VE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.18e-74MYB family protein