PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023883789.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 416aa    MW: 46844.6 Da    PI: 6.9597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023883789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-05730126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt+lC  +++ G C++  +C+FaHg
  XP_023883789.1  7 FKTKLCVLYQK-GRCSR-QSCSFAHG 30
                    69*********.*****.*******9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    
MVERKLFKTK LCVLYQKGRC SRQSCSFAHG DSELRGFSAS YSGRRDYQGS DLRDKLARRH  60
SPSRRYPPVR DAGGRQMLRE FSSSRSLERK RKKQDFDGQG DFSGSLRMLE GNEDQVKEGK  120
IVSTDSKDVL EEQVDLEEST QEADSLTSRI QELEAQLLKE KEEHKRITSK IKKFVKAHNR  180
YSRIQDELKR SQVRLQKLGD QLGSDISRNG ANEEDSINIL SDGENIGSPV TSQHNELQND  240
ASPGKKRLCV NLYPSEEPKQ GGHMDKTIRF KKLSRWNVQP AQSNRNEIEL MKKAVNDGID  300
SHRPLANEGK HKRGKTVPTS IISADKMKGL ESALVVPSTS MAGHVLEEEV EIELDKIEVV  360
KTADTGIEKE PACEIIGVPL PLPPPPPIHQ NNYSLHEGDD ENVDVDGLEM VHVDIV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.15e-40C3H family protein