PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883649.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HB-other

Protein Properties

Length: 798aa MW: 87226.8 Da PI: 6.5691

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883649.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.3	8e-16	48	99	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++tkeq ++Le++F+++++p+++ ++ A++lg++ ++V +WFqNrRak k+ XP_023883649.1 48 RLTKEQHDILETHFQEQNKPNTNIKKAFAESLGVSLERVNNWFQNRRAKSKQ 99 589***********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence
MEYLDFSGHA GFSDHYNPHA NPTLEDMHNS SYYNPNMNAA LSCDIKPRLT KEQHDILETH 60 FQEQNKPNTN IKKAFAESLG VSLERVNNWF QNRRAKSKQD AKKQQGAINL FQPRQDGSGH 120 VEWDSSTEVS PAFSSTEYAS MMQQCGPNDT VPDSLPRSIS MSQPRQVDMG AGVPYHSFSS 180 GNPTGSYATC GLPQTQYDFY DSPQELNRRT LTQDQFDAIA QNGNLMQGYD NYDLFHPGLG 240 SGADLSTDDF LQQNGAVKQP STFSNPLAMT NVLPAHDSTG FPASSANSFS TMSHLHERAS 300 MSVSASEWSD SRSSSVTGIQ PAVSSESTNS QWTPGQSVEV DFKALNEQFQ QVAQARLASQ 360 EQPLAFPTDE AFAQRDPQAT LLAHDMSHIG IDTPQTHPNG VFKGPVPPSS IAARRQRPRP 420 AALGLASLRS QSYSGATQPN SPSHAPQTNV ASGQSLRRIR SSNVVGGVSQ GRVQKVAGPA 480 QRSPMNWNFP ESLNSPKALR HASQAADGTL APPTPMSPQF PRPEPTRSAN PWQTSAAGQA 540 SRQPSISEHD TEREESYAPH TSVLPPQKFC SPPHTPMYYQ QQFYPQHMSN NFHLENTPPQ 600 SAPPSQQCFA MNYPGSTVTQ SQAALQQQPV GYAPAQTQQA ISAMTPEQQF PLSNVAYGPV 660 QPFNVAIPTV PEDVTMRYPY GVPIINANGQ MQMGFPPQLQ LLQQHQGSQM TSISQAQFPH 720 LHAPGSSPET RNTRKPAPEF EVHEYTPSDA LKRGAGPHKA VDTGPKNYTF ANQGPEHFDK 780 GKKPSETNSS STTDDLNR

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence

MEYLDFSGHA GFSDHYNPHA NPTLEDMHNS SYYNPNMNAA LSCDIKPRLT KEQHDILETH  60
FQEQNKPNTN IKKAFAESLG VSLERVNNWF QNRRAKSKQD AKKQQGAINL FQPRQDGSGH  120
VEWDSSTEVS PAFSSTEYAS MMQQCGPNDT VPDSLPRSIS MSQPRQVDMG AGVPYHSFSS  180
GNPTGSYATC GLPQTQYDFY DSPQELNRRT LTQDQFDAIA QNGNLMQGYD NYDLFHPGLG  240
SGADLSTDDF LQQNGAVKQP STFSNPLAMT NVLPAHDSTG FPASSANSFS TMSHLHERAS  300
MSVSASEWSD SRSSSVTGIQ PAVSSESTNS QWTPGQSVEV DFKALNEQFQ QVAQARLASQ  360
EQPLAFPTDE AFAQRDPQAT LLAHDMSHIG IDTPQTHPNG VFKGPVPPSS IAARRQRPRP  420
AALGLASLRS QSYSGATQPN SPSHAPQTNV ASGQSLRRIR SSNVVGGVSQ GRVQKVAGPA  480
QRSPMNWNFP ESLNSPKALR HASQAADGTL APPTPMSPQF PRPEPTRSAN PWQTSAAGQA  540
SRQPSISEHD TEREESYAPH TSVLPPQKFC SPPHTPMYYQ QQFYPQHMSN NFHLENTPPQ  600
SAPPSQQCFA MNYPGSTVTQ SQAALQQQPV GYAPAQTQQA ISAMTPEQQF PLSNVAYGPV  660
QPFNVAIPTV PEDVTMRYPY GVPIINANGQ MQMGFPPQLQ LLQQHQGSQM TSISQAQFPH  720
LHAPGSSPET RNTRKPAPEF EVHEYTPSDA LKRGAGPHKA VDTGPKNYTF ANQGPEHFDK  780
GKKPSETNSS STTDDLNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17460.1	1e-09	HD-ZIP family protein