PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883493.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 516aa MW: 57174.9 Da PI: 7.4401

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.6e-17	159	208	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023883493.1 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208 78*****************......55**********************997 PP
2	AP2	41.9	2.4e-13	251	301	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_023883493.1 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKCNG 301 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MWDLNDSPDQ RRHDESEGCS SQKTSFDGDD DKGKRVGSMS NSSSSALVIE DGSDDDQDCD 60 PKKFKRRSSP NKLFGFSFNE PQPVTHQFFP VDESEMGATS GGALVGAVES TGGSSAATFP 120 RAHWVGVKFC QSDSLSPGKC VDVSQPMKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC 180 GKQVYLGGFD TAHAAARAYD RAAIKFRGVE ADINFRIEDY EEDLKQMNNL TKEEFVHVLR 240 RQSTGFPRGS SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDSEIEAAR AYDKAAIKCN 300 GKEAVTNFDP SIYENELNNS TESSGSAAEH NLDLSLGNSN VKQNGLALGN DGYNAAMGQN 360 LMLMPLEADW RNQGFRPNKE ASRGESDGLG HGHGRDGYSE TETMQILSRT HLQSASSNSN 420 EMQRHVYFRR AGETQMQHNF TPHISPPNYQ VQYPSSSGNG GRIGGDLSLT INDQQWQSAP 480 PQLFAAAAAS SGFSPQIKSS QHWLQKNGFH TLMRPS

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MWDLNDSPDQ RRHDESEGCS SQKTSFDGDD DKGKRVGSMS NSSSSALVIE DGSDDDQDCD  60
PKKFKRRSSP NKLFGFSFNE PQPVTHQFFP VDESEMGATS GGALVGAVES TGGSSAATFP  120
RAHWVGVKFC QSDSLSPGKC VDVSQPMKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGVE ADINFRIEDY EEDLKQMNNL TKEEFVHVLR  240
RQSTGFPRGS SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDSEIEAAR AYDKAAIKCN  300
GKEAVTNFDP SIYENELNNS TESSGSAAEH NLDLSLGNSN VKQNGLALGN DGYNAAMGQN  360
LMLMPLEADW RNQGFRPNKE ASRGESDGLG HGHGRDGYSE TETMQILSRT HLQSASSNSN  420
EMQRHVYFRR AGETQMQHNF TPHISPPNYQ VQYPSSSGNG GRIGGDLSLT INDQQWQSAP  480
PQLFAAAAAS SGFSPQIKSS QHWLQKNGFH TLMRPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	67	PKKFKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-134	AP2 family protein