PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883425.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 699aa MW: 77709.4 Da PI: 6.0183

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883425.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	1e-05	120	138	11	26
GTS...--TTTTT-SS-SS CS zf-CCCH 11 rtG...tCkyGdrCkFaHg 26 +tG C+y d+C+F+H+ XP_023883425.1 120 KTGditSCPYSDKCRFSHD 138 7788889***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MDESATSTIT TTEESVVKNP ELSLVPPPPS EPADSHSKSH SELTTEELVA KSIAPINKHF 60 LRPPPLRPSS NDAVSQTTAN AAPAPSQSSF VKDKKSKRQL KRERRQDQKS SKNICPLIAK 120 TGDITSCPYS DKCRFSHDVE GFKAQKPEDI EGECPFLDSE EPCPYGLACR FLGTHKSKDK 180 DGVLGGKKKM SDECNGLNKD VQKLLWKNKM KFPKADAKLK ALGLLGKAKS KTKIVEEKED 240 DETVPGTCHV TDGNGVSEVN GDLDTKLESA EVPEEDDLDI KDGSDEPPMK KPKSVIEEND 300 VTFMEKVVGE SCTQTEPEAG MDVTTPEGDR SLKLHPREKK IIDFREKLYL APLTTVGNLP 360 FRRVCKVLGA DVTCGEMAMC TNLLQGQASE WALLRRHSSE DLFGVQICGA YPDTVARAME 420 LIDQECTVDF IDINMGCPID IVVEKGAGSA LLNKPMRIKS IIEAASGTVD KPITVKVRTG 480 FFEGKNRIDS LITDIGNWGA SAVTIHGRSR QQRYSKLANW DYVYQCARKA PDALQVMGNG 540 DVFSYLDWNT RKADCPELAT CMIARGALIK PWIFTEIKEQ RHWDITSGER LNILKDFVRL 600 GLEHWGSDTK GVETTRRFLL EWLSYTCRYI PVGLLDVIPQ RLNWRPPSYY GRDDLETLMV 660 SDSAADWVRI SEMLLGKVPD GFTFAPKHKS NAYDRAENG

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MDESATSTIT TTEESVVKNP ELSLVPPPPS EPADSHSKSH SELTTEELVA KSIAPINKHF  60
LRPPPLRPSS NDAVSQTTAN AAPAPSQSSF VKDKKSKRQL KRERRQDQKS SKNICPLIAK  120
TGDITSCPYS DKCRFSHDVE GFKAQKPEDI EGECPFLDSE EPCPYGLACR FLGTHKSKDK  180
DGVLGGKKKM SDECNGLNKD VQKLLWKNKM KFPKADAKLK ALGLLGKAKS KTKIVEEKED  240
DETVPGTCHV TDGNGVSEVN GDLDTKLESA EVPEEDDLDI KDGSDEPPMK KPKSVIEEND  300
VTFMEKVVGE SCTQTEPEAG MDVTTPEGDR SLKLHPREKK IIDFREKLYL APLTTVGNLP  360
FRRVCKVLGA DVTCGEMAMC TNLLQGQASE WALLRRHSSE DLFGVQICGA YPDTVARAME  420
LIDQECTVDF IDINMGCPID IVVEKGAGSA LLNKPMRIKS IIEAASGTVD KPITVKVRTG  480
FFEGKNRIDS LITDIGNWGA SAVTIHGRSR QQRYSKLANW DYVYQCARKA PDALQVMGNG  540
DVFSYLDWNT RKADCPELAT CMIARGALIK PWIFTEIKEQ RHWDITSGER LNILKDFVRL  600
GLEHWGSDTK GVETTRRFLL EWLSYTCRYI PVGLLDVIPQ RLNWRPPSYY GRDDLETLMV  660
SDSAADWVRI SEMLLGKVPD GFTFAPKHKS NAYDRAENG