PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023883394.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family ARR-B
Protein Properties Length: 410aa    MW: 46927.5 Da    PI: 8.6288
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023883394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like568.5e-18164220155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL...tlehvkSHLQkYRl 55 
                     k r+ W  ++ e+Fve v+++ G++kAtPk++le mk kg+   ++++v SHLQk+Rl
  XP_023883394.1 164 KCRMSWKMDIQEKFVESVQEM-GIDKATPKKVLERMKTKGVrnvSRDQVSSHLQKHRL 220
                     579******************.**************99885333899**********8 PP
2Response_reg40.31.7e-14271341107
                     EEEE.SSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
    Response_reg   1 vliv.dDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                     +l+v +D++ ++e+++++ + k++y +v+e+ + eeal+ll+     +D+i++  +m g++ +el++  re++  lp++v +  +  +++++ l+
  XP_023883394.1  27 ILVVdHDQKCLQEVVTNLRKcKHQY-KVTECNQVEEALTLLRMDFsgFDIIITGQRMLGISEFELFRIGRERG--LPVVVTSEDDGVDTIQRSLD 118
                     7999556666777777777799***.***************766667******************98668877..*******9999********* PP

                     TTESEEEESS--HHHH CS
    Response_reg  92 aGakdflsKpfdpeel 107
                     +Ga  + +Kp+++++l
  XP_023883394.1 119 YGACAYMEKPIPMRDL 134
                     ***********99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    
MDRKSKGKAV LTESDTGFDY SPVGLSILVV DHDQKCLQEV VTNLRKCKHQ YKVTECNQVE  60
EALTLLRMDF SGFDIIITGQ RMLGISEFEL FRIGRERGLP VVVTSEDDGV DTIQRSLDYG  120
ACAYMEKPIP MRDLNMVWTH VYSSRKNKLA QVQKPANDMS RAKKCRMSWK MDIQEKFVES  180
VQEMGIDKAT PKKVLERMKT KGVRNVSRDQ VSSHLQKHRL KLQKQAPPLH MQEYKDKDGT  240
SSGHVESRYE MEHPPMTLLN GFLNTPDPNQ LDISSQQQRA PAAIKNTHGF PNLPLPVEAN  300
FCTIEGAYSF YWNESCPVGI FEHFTWEDIA HDHSENLFFD DDTGSQPLDY LKPKSESGEV  360
IPNSKENASL LNTLRRRRRQ RRQGMKIKSK EERSSLVKFN KATVVLVLAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375382RRRRRQRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-35ARR-B family protein