PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883360.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 508aa MW: 55582.1 Da PI: 8.7845

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023883360.1 79 FVCEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	12.1	0.0006	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_023883360.1 155 WKCDKCSKKYAVQSDWKAHSKTC 177 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MSNITGGEAG SFSSGNTGGE EVQQKDEQLN HYDPNNGSTT QQQQQAPPAK KKRNLPGTPD 60 PSAEVIALSP TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TTTEIRKRVY 120 VCPESSCVHH NPTRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR 180 EYKCDCGTIF SRRDSFITHR AFCDALSEEN NKAKQGLLSN MGQNLPGQVH PQLMSSIPIN 240 NNNNSNTTSG TSGFNQSDTK VPISLPQEIM SFPPNKPLNM AGSLFSGPRS ISSSSPSLQL 300 NTNSSSSIFE GNGHQLASLA AHMPATALLQ KAAQMGATVS NSGMNCQVMQ NNSFVTSMAP 360 PSFSAIQPQN DQSFINQFIQ KGQHGNSYEN GMTDNLGMTN MGMLNSLLDQ NSALLKNIKH 420 DNSNSNSTVL HGGDSKAGLT SSTKDSNGSE DMMTLDFLGI GGGARHGNFY ELQQQKQQEM 480 GFEGIGQRIQ GLSHFQQQAS MEKPMWEV

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MSNITGGEAG SFSSGNTGGE EVQQKDEQLN HYDPNNGSTT QQQQQAPPAK KKRNLPGTPD  60
PSAEVIALSP TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TTTEIRKRVY  120
VCPESSCVHH NPTRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR  180
EYKCDCGTIF SRRDSFITHR AFCDALSEEN NKAKQGLLSN MGQNLPGQVH PQLMSSIPIN  240
NNNNSNTTSG TSGFNQSDTK VPISLPQEIM SFPPNKPLNM AGSLFSGPRS ISSSSPSLQL  300
NTNSSSSIFE GNGHQLASLA AHMPATALLQ KAAQMGATVS NSGMNCQVMQ NNSFVTSMAP  360
PSFSAIQPQN DQSFINQFIQ KGQHGNSYEN GMTDNLGMTN MGMLNSLLDQ NSALLKNIKH  420
DNSNSNSTVL HGGDSKAGLT SSTKDSNGSE DMMTLDFLGI GGGARHGNFY ELQQQKQQEM  480
GFEGIGQRIQ GLSHFQQQAS MEKPMWEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	4e-99	C2H2 family protein