PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023883290.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 558aa    MW: 62620.4 Da    PI: 6.4674
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023883290.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.52.7e-1211815572374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkf 93 
                     ++ L+ cA+a+s +dl++a   ++ l +++s +g+p+qRl ay++e+L+arl rs+s++ykal++ e +++    sse  ++++++++++P+ +f
  XP_023883290.1 181 RKGLIYCADAISREDLTAAVDWMELLGKQVSVSGEPIQRLGAYMLEGLRARLERSGSSIYKALKCVEPTSSVeptSSELKSYMTILYQICPYWQF 275
                     6789***********************************************************9999988777867777777788********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     ++   N  I e +++e  +HiiDf+i qG+QW  L+++La Rp+gpp +RiTgv++++s+  +   l+ +++rL+k Ae+++vpf+f+  +a + 
  XP_023883290.1 276 AYKSSNAVIEEVMANEPVIHIIDFQIAQGTQWEHLIHSLARRPGGPPVVRITGVDDSQSFhaRGGGLHIVEQRLTKCAESCRVPFQFHN-AAMSG 369
                     ********************************************************9999889999***********************.89999 PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++e ++L+v+pgEalaV + + lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++F++rfle+l+yy+a+f+s+++  pr++++
  XP_023883290.1 370 CEVERQNLSVQPGEALAVIFPYVLHHMPDESVSTHNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFFTRFLETLDYYTAMFESIDVARPRNDKQ 464
                     9********************************************************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ri+ E+++++r+ivn++ace+aer+erhe l+kW +rl++aGF+ +pls++++++++ ll++     yr+e ++g+l+l W dr++ + SaWr
  XP_023883290.1 465 RISAEQHCVARDIVNMIACENAERVERHELLGKWIRRLSMAGFTLYPLSNSVTNTVNDLLKQQFHVNYRLERRDGALYLSWLDRKMATSSAWR 557
                     *********************************************************9998877555*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MQTSQEHHSS SSLHGLYHQP LQEIDPYCVQ HFQIIENNVC PDTGSQGTTV SFQPYPEQPQ  60
FFTLDSSPAT VGYIDYNSPS ATSFLSNRSP FSPQVSQSCL SDQHHSPDNT YGSPASGSSV  120
ADNGNEFKHK LREIEISLLG SESGIVDSCH YCPNSGIHKA TSVSGCNWNQ LVQVNPSLDL  180
RKGLIYCADA ISREDLTAAV DWMELLGKQV SVSGEPIQRL GAYMLEGLRA RLERSGSSIY  240
KALKCVEPTS SVEPTSSELK SYMTILYQIC PYWQFAYKSS NAVIEEVMAN EPVIHIIDFQ  300
IAQGTQWEHL IHSLARRPGG PPVVRITGVD DSQSFHARGG GLHIVEQRLT KCAESCRVPF  360
QFHNAAMSGC EVERQNLSVQ PGEALAVIFP YVLHHMPDES VSTHNHRDRL LRLVKSLSPK  420
VVTIVEQESN TNTSPFFTRF LETLDYYTAM FESIDVARPR NDKQRISAEQ HCVARDIVNM  480
IACENAERVE RHELLGKWIR RLSMAGFTLY PLSNSVTNTV NDLLKQQFHV NYRLERRDGA  540
LYLSWLDRKM ATSSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein