PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883131.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 775aa MW: 86582.4 Da PI: 6.0343

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.5	1.3e-12	7	52	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g WT Ede+l+ av ++G ++W+++++ + ++t+kqck rw +l XP_023883131.1 7 GVWTNIEDEILKAAVSKYGLNQWARVSSLLA-RKTAKQCKARWAEWL 52 78***************************.*********8775 PP
2	Myb_DNA-binding	34.7	4e-11	60	102	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W+ eEde+l+++ k++++ W+tIa +g Rt+ qc +r+qk+l XP_023883131.1 60 EWSREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTATQCLERYQKLL 102 6***************99.****8..**********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence
MPVVKGGVWT NIEDEILKAA VSKYGLNQWA RVSSLLARKT AKQCKARWAE WLDPGIRKIE 60 WSREEDEKLL HLAKLMPTQW RTIAPIVGRT ATQCLERYQK LLDEAEAREN AGELALGGPD 120 GGEASAPTAD DVRRLRPGEL DPDPESKPAR PDTIDLDEDE KEMLSEARAR LANTQGKKAK 180 RKARERQLEE SRRLAVLQKR RELKNAGINI KVTTKKKGQM DYNADIPFEK APAAGFYDTQ 240 DELARNEYQR EMFDPRKQQL ANKRKGDAQE VDEQGTKRRK NDKDSGAAAF AAAAKAGQLQ 300 RIREAEQSSK RRSLTLPAPQ VSESELEDIV KMGMTGERAS QSAEMSENHG TRGLIGSYAN 360 TVGATPIRTP RAPQEEDRIS NELRDARTRT STQSALLGGD NTPMADEAST TGYGGVVPSR 420 QVMSTPNPLA TPLRLSSGPN HSGTSATPLR TPRDTFHLNA DDGSVQLLQQ TPHDIRLREK 480 TMRADIRSKL ASLPKPKEVE WELELPEERE ERDDGPDQLG QEDAAARDKR NADLAHMSAI 540 ADFKRQTAVV QKGLPRPKTV DLDVMLKNSR AIDDPIMRSV AEEVALLMSN DSVKFDGRKG 600 VKTCTPLQIF ADEALQAARM EVILEMGQND QRNLFGEAFL REWDTVHNGT ILPGLAGYAE 660 DEIDEHQLQT EAFDTLQEAM TTSAEKSTVL EKKLAKVHGG YAERQKKLKA KILEAADFLE 720 KTKLDFETIK YKIAAEEGGM SARLEQGREE VVLVARRERE AQELYRERTK ELESL

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence

MPVVKGGVWT NIEDEILKAA VSKYGLNQWA RVSSLLARKT AKQCKARWAE WLDPGIRKIE  60
WSREEDEKLL HLAKLMPTQW RTIAPIVGRT ATQCLERYQK LLDEAEAREN AGELALGGPD  120
GGEASAPTAD DVRRLRPGEL DPDPESKPAR PDTIDLDEDE KEMLSEARAR LANTQGKKAK  180
RKARERQLEE SRRLAVLQKR RELKNAGINI KVTTKKKGQM DYNADIPFEK APAAGFYDTQ  240
DELARNEYQR EMFDPRKQQL ANKRKGDAQE VDEQGTKRRK NDKDSGAAAF AAAAKAGQLQ  300
RIREAEQSSK RRSLTLPAPQ VSESELEDIV KMGMTGERAS QSAEMSENHG TRGLIGSYAN  360
TVGATPIRTP RAPQEEDRIS NELRDARTRT STQSALLGGD NTPMADEAST TGYGGVVPSR  420
QVMSTPNPLA TPLRLSSGPN HSGTSATPLR TPRDTFHLNA DDGSVQLLQQ TPHDIRLREK  480
TMRADIRSKL ASLPKPKEVE WELELPEERE ERDDGPDQLG QEDAAARDKR NADLAHMSAI  540
ADFKRQTAVV QKGLPRPKTV DLDVMLKNSR AIDDPIMRSV AEEVALLMSN DSVKFDGRKG  600
VKTCTPLQIF ADEALQAARM EVILEMGQND QRNLFGEAFL REWDTVHNGT ILPGLAGYAE  660
DEIDEHQLQT EAFDTLQEAM TTSAEKSTVL EKKLAKVHGG YAERQKKLKA KILEAADFLE  720
KTKLDFETIK YKIAAEEGGM SARLEQGREE VVLVARRERE AQELYRERTK ELESL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	263	280	KRKGDAQEVDEQGTKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	1e-131	MYB family protein