PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023882960.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C2H2
Protein Properties Length: 340aa    MW: 37875.2 Da    PI: 5.8427
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023882960.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.5e-06271293223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C  Cg  F+r++n+k H++t H
  XP_023882960.1 271 RCDECGLLFRRRYNMKAHMKTrH 293
                     8********************99 PP
2zf-C2H212.20.00057300323122
                     EEET..TTTEEESSHHHHHHHHHH CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt 22 
                     + C+  dC   F rk +L+rH rt
  XP_023882960.1 300 HACGfaDCQWGFHRKTDLNRHERT 323
                     579999***************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MSIDPASCND EISSKGQDDW NPMFNPSAGS YSSTMAPVEP MWHFTQVPQG LGLMFPQMAS  60
CPTFDGIAQN VRQVTMPYWV PDWAVTHAPI PQSMLARKDS WNAGSDAAST QMPPVWEPFD  120
VTAAVLDYDT SSLSSDSASP HSSAASSPHA CSETATWVAG SPAIKTEDHP SPLNTYETYL  180
HDRGAPDQSL VMGCLETVPQ TKTEEKQAVT HMDWNSCTPS DPKYTCDDYK PVLNLQHDLR  240
HDEDTKKEID LKVLAVRPKR QFTNAGNAVC RCDECGLLFR RRYNMKAHMK TRHTNQTKPH  300
ACGFADCQWG FHRKTDLNRH ERTVSTAFDF SLNNQGLTVD