PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023882705.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 713aa MW: 78476.3 Da PI: 7.7888

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023882705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.4e-23	114	215	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + + XP_023882705.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAE 204 89**************************997556555..8********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_023882705.1 205 NGDLCVGIRRA 215 8999**997 PP
2	Auxin_resp	115.1	6.5e-38	279	362	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++Fev Y+Prast+eF+vk++ v+++++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ XP_023882705.1 279 AAALAASGQPFEVAYYPRASTPEFCVKASAVKATMRTQWCSGMRFKMAFETEDSSRISWfMGTIASVQVADPLRWPNSPWRLLQ 362 678899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence
MKEAEKSLDP QLWHACAGGM VQMPQVNSKV FYFPQGHAEH AQVHVDFSSL PRIPALIPCR 60 VGAVKFLADP ETDEVFSKIR LIPLGNRNIG ELDFEDDGVV GANGSENPEK PASFAKTLTQ 120 SDANNGGGFS VPRYCAETIF PRLDYTADPP VQTVIAKDVH GEVWKFRHIY RGTPRRHLLT 180 TGWSTFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GALESPSGWN PGPGNSVSSY 240 GGFSMFLREQ ENKVMRNSSP AGGNLSGKGK VRPESVIEAA ALAASGQPFE VAYYPRASTP 300 EFCVKASAVK ATMRTQWCSG MRFKMAFETE DSSRISWFMG TIASVQVADP LRWPNSPWRL 360 LQVTWDEPDL LQNVKRVSPW LVELVSNMPV IHISPFSPPR KKLRFPQHPD FSHDGQFPMP 420 SFSGNPLGSS SPLCFLSDNT PAGIQGARHA QFGISLSDLH FNNKLQPGLF PSNFQRYNMN 480 PRTSNSIMTS NTNSNENLSC LLTIGNSSQN LEKSDNVKRH QFLLFGQPII TEQQISRSCS 540 SDTVSQVLTG KSSSDENQDK VKFLSDGSGS TLDQQVSPEK SSSTGFSWHQ GFQTTELGLD 600 TGHCKVFMES EDVGRTLDLS VLGSYEELHR RLANMFGIER SDMLNHVVYR DATGAVKQTG 660 DEPFSDFMKT AKRLTIFNVS SSNNIGRTWI TGMRNAENGL DASNKTGPLS IFA

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence

MKEAEKSLDP QLWHACAGGM VQMPQVNSKV FYFPQGHAEH AQVHVDFSSL PRIPALIPCR  60
VGAVKFLADP ETDEVFSKIR LIPLGNRNIG ELDFEDDGVV GANGSENPEK PASFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PRLDYTADPP VQTVIAKDVH GEVWKFRHIY RGTPRRHLLT  180
TGWSTFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GALESPSGWN PGPGNSVSSY  240
GGFSMFLREQ ENKVMRNSSP AGGNLSGKGK VRPESVIEAA ALAASGQPFE VAYYPRASTP  300
EFCVKASAVK ATMRTQWCSG MRFKMAFETE DSSRISWFMG TIASVQVADP LRWPNSPWRL  360
LQVTWDEPDL LQNVKRVSPW LVELVSNMPV IHISPFSPPR KKLRFPQHPD FSHDGQFPMP  420
SFSGNPLGSS SPLCFLSDNT PAGIQGARHA QFGISLSDLH FNNKLQPGLF PSNFQRYNMN  480
PRTSNSIMTS NTNSNENLSC LLTIGNSSQN LEKSDNVKRH QFLLFGQPII TEQQISRSCS  540
SDTVSQVLTG KSSSDENQDK VKFLSDGSGS TLDQQVSPEK SSSTGFSWHQ GFQTTELGLD  600
TGHCKVFMES EDVGRTLDLS VLGSYEELHR RLANMFGIER SDMLNHVVYR DATGAVKQTG  660
DEPFSDFMKT AKRLTIFNVS SSNNIGRTWI TGMRNAENGL DASNKTGPLS IFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein