PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023882698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | ARF | ||||||||
Protein Properties | Length: 713aa MW: 78476.3 Da PI: 7.7888 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.3 | 1.4e-23 | 114 | 215 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + + XP_023882698.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAE 204 89****************************997556555..8************************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_023882698.1 205 NGDLCVGIRRA 215 8999****997 PP | |||||||
2 | Auxin_resp | 115.1 | 6.5e-38 | 279 | 362 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++Fev Y+Prast+eF+vk++ v+++++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ XP_023882698.1 279 AAALAASGQPFEVAYYPRASTPEFCVKASAVKATMRTQWCSGMRFKMAFETEDSSRISWfMGTIASVQVADPLRWPNSPWRLLQ 362 678899****************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence |
MKEAEKSLDP QLWHACAGGM VQMPQVNSKV FYFPQGHAEH AQVHVDFSSL PRIPALIPCR 60 VGAVKFLADP ETDEVFSKIR LIPLGNRNIG ELDFEDDGVV GANGSENPEK PASFAKTLTQ 120 SDANNGGGFS VPRYCAETIF PRLDYTADPP VQTVIAKDVH GEVWKFRHIY RGTPRRHLLT 180 TGWSTFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GALESPSGWN PGPGNSVSSY 240 GGFSMFLREQ ENKVMRNSSP AGGNLSGKGK VRPESVIEAA ALAASGQPFE VAYYPRASTP 300 EFCVKASAVK ATMRTQWCSG MRFKMAFETE DSSRISWFMG TIASVQVADP LRWPNSPWRL 360 LQVTWDEPDL LQNVKRVSPW LVELVSNMPV IHISPFSPPR KKLRFPQHPD FSHDGQFPMP 420 SFSGNPLGSS SPLCFLSDNT PAGIQGARHA QFGISLSDLH FNNKLQPGLF PSNFQRYNMN 480 PRTSNSIMTS NTNSNENLSC LLTIGNSSQN LEKSDNVKRH QFLLFGQPII TEQQISRSCS 540 SDTVSQVLTG KSSSDENQDK VKFLSDGSGS TLDQQVSPEK SSSTGFSWHQ GFQTTELGLD 600 TGHCKVFMES EDVGRTLDLS VLGSYEELHR RLANMFGIER SDMLNHVVYR DATGAVKQTG 660 DEPFSDFMKT AKRLTIFNVS SSNNIGRTWI TGMRNAENGL DASNKTGPLS IFA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | ARF family protein |