PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023882259.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 493aa MW: 55576.2 Da PI: 4.6839

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023882259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5e-16	191	236	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +v++++ +G++ W++Ia++++ gR ++++k+ w+++l XP_023882259.1 191 RGNFTKEEEESIVKLHEAWGNK-WSKIASHLP-GRMDNEIKNVWNTHL 236 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MKGPSVIEKP PVLLCKDSKY ALEQFSSIIT LDDYEDLSNH ATEAMRETRL FCIAQPVYVT 60 NSSTFKLAIF NSVCCLTGLL VGASGIIDNK TVSTSLEYNA KLTPLDGELI SNATRYRQLV 120 GSLIYLTVTR PDISHAMGMD SKFMDAPHSV HYPAVLRILR YVKGTLYHGL LRCGKSCRLR 180 WINYLWPDVK RGNFTKEEEE SIVKLHEAWG NKWSKIASHL PGRMDNEIKN VWNTHLKKNL 240 TMKEGNVHGD ELSSITSSSS SSSSPFTSRE KQNIGGGIEH QSEQVPVDKK PHEECNLTHD 300 FEKIQGSQTE DTNQFNIGKD LIDQSSSYSS YDSNVSNSSP VDALRPEEQM VLLFDYGEPF 360 DVSNILQEVN KPDVDSVNEI PFVTDVDFWN MLDNLDSVMS NEVQHSEVNA CQSSNFEEEG 420 SKNVDENKKW LRYLENELGL DAMEEENKDI STKDAARLLV PENVLVSDIF KPETNPDMGY 480 FETWPSLPHS SAF

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MKGPSVIEKP PVLLCKDSKY ALEQFSSIIT LDDYEDLSNH ATEAMRETRL FCIAQPVYVT  60
NSSTFKLAIF NSVCCLTGLL VGASGIIDNK TVSTSLEYNA KLTPLDGELI SNATRYRQLV  120
GSLIYLTVTR PDISHAMGMD SKFMDAPHSV HYPAVLRILR YVKGTLYHGL LRCGKSCRLR  180
WINYLWPDVK RGNFTKEEEE SIVKLHEAWG NKWSKIASHL PGRMDNEIKN VWNTHLKKNL  240
TMKEGNVHGD ELSSITSSSS SSSSPFTSRE KQNIGGGIEH QSEQVPVDKK PHEECNLTHD  300
FEKIQGSQTE DTNQFNIGKD LIDQSSSYSS YDSNVSNSSP VDALRPEEQM VLLFDYGEPF  360
DVSNILQEVN KPDVDSVNEI PFVTDVDFWN MLDNLDSVMS NEVQHSEVNA CQSSNFEEEG  420
SKNVDENKKW LRYLENELGL DAMEEENKDI STKDAARLLV PENVLVSDIF KPETNPDMGY  480
FETWPSLPHS SAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	4e-38	MYB family protein