PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023881684.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 142aa MW: 16373.2 Da PI: 10.1652 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.5 | 8.1e-19 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+nk + tf+kRrng+ KA EL +LC+a+va i+fs+++k+y++ XP_023881684.1 9 KEIQNKGAMYCTFTKRRNGLCSKARELHTLCGAQVAAIVFSPKNKMYTF 57 6799********************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence |
MGRSKIEIKE IQNKGAMYCT FTKRRNGLCS KARELHTLCG AQVAAIVFSP KNKMYTFGEP 60 SVDSVVNRFL QEQQQRQPLN RGGQKKKKTI TFLSDECIEG FELHELMHCT ALMEKFVKKL 120 EERLADVVHR RVQTKDLISL IK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-22 | M-type_MADS family protein |