PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023881044.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 451aa MW: 49294.1 Da PI: 8.1617

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023881044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.1	2e-10	47	72	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C +++rtG+C yG++C+++H+ XP_023881044.1 47 PGEPNCLYYLRTGQCGYGSNCRYNHP 72 5789*********************8 PP
2	zf-CCCH	36.4	8.9e-12	91	115	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_023881044.1 91 QPDCGYFLKTGTCKYGSTCKYHHPR 115 789********************96 PP
3	zf-CCCH	38	2.8e-12	138	160	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f++rtG Ck+G CkF+H+p XP_023881044.1 138 SCPFYMRTGSCKFGVACKFHHPP 160 6********************97 PP
4	zf-CCCH	39.7	7.9e-13	291	316	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ CkF+H++ XP_023881044.1 291 DQPECRYFMNNGTCKYGSDCKFHHPK 316 689*********************96 PP
5	zf-CCCH	35.3	1.9e-11	334	358	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G CkyG++CkF H+ XP_023881044.1 334 GQAVCSYYSMYGLCKYGPTCKFDHP 358 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MPDNRQVQKN AMPNHSANNI EAFWRLKLND NQEGGAAAQS AAYPDRPGEP NCLYYLRTGQ 60 CGYGSNCRYN HPSYASQGAL YSGELPERVG QPDCGYFLKT GTCKYGSTCK YHHPRDRRGA 120 GPVSFNILGL PMRQEEKSCP FYMRTGSCKF GVACKFHHPP PASLGPVLPV PGHVAFGSMT 180 PTVVPSSGLP YVGGFPAWSL PRMPYVSSPR WQDPQSYPSV PFSPSQGIVS AQGWNTYNTY 240 MGSMSPMSPT SSASVLGSSF VYNSKNLGES GSSGQVHLSS TPALILPERP DQPECRYFMN 300 NGTCKYGSDC KFHHPKERIT QSIATQPGLP LRPGQAVCSY YSMYGLCKYG PTCKFDHPVV 360 APPYNYTLSL PALSMLDSPL FNYPRSLSTA HSSETSPSKS SRFPDWVQKH DATNNEHENS 420 DTKTPEDSPE QAAASPRPIP TSTEPLHDQS G

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MPDNRQVQKN AMPNHSANNI EAFWRLKLND NQEGGAAAQS AAYPDRPGEP NCLYYLRTGQ  60
CGYGSNCRYN HPSYASQGAL YSGELPERVG QPDCGYFLKT GTCKYGSTCK YHHPRDRRGA  120
GPVSFNILGL PMRQEEKSCP FYMRTGSCKF GVACKFHHPP PASLGPVLPV PGHVAFGSMT  180
PTVVPSSGLP YVGGFPAWSL PRMPYVSSPR WQDPQSYPSV PFSPSQGIVS AQGWNTYNTY  240
MGSMSPMSPT SSASVLGSSF VYNSKNLGES GSSGQVHLSS TPALILPERP DQPECRYFMN  300
NGTCKYGSDC KFHHPKERIT QSIATQPGLP LRPGQAVCSY YSMYGLCKYG PTCKFDHPVV  360
APPYNYTLSL PALSMLDSPL FNYPRSLSTA HSSETSPSKS SRFPDWVQKH DATNNEHENS  420
DTKTPEDSPE QAAASPRPIP TSTEPLHDQS G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-109	C3H family protein