PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023880621.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 602aa MW: 65764.8 Da PI: 7.5596

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023880621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.5e-16	76	122	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l XP_023880621.1 76 KGGWTAQEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 122 688***************************.**********986 PP
2	Myb_DNA-binding	61.9	1.3e-19	128	174	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G+ W++Ia+ ++ gR +kqc++rw+++l XP_023880621.1 128 KGPWTQEEDDKIIELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 174 79****************************.***********97 PP
3	Myb_DNA-binding	57.9	2.3e-18	180	223	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_023880621.1 180 KDAWTPEEELALMKAHQIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 223 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MSSTSVPATT AEATNDEMAG LKLEECCLEN KQSTAASSST SSEGSGSAIV KSPGVCSPAP 60 TSPAHRRATG PIRRAKGGWT AQEDETLRNA VAAFKGKSWK KIAEFFPDRS EVQCLHRWQK 120 VLNPDLIKGP WTQEEDDKII ELVSKYGPTK WSLIAKSLPG RIGKQCRERW HNHLNPDIKK 180 DAWTPEEELA LMKAHQIHGN KWAEIAKVLP GRTDNAIKNH WNSSLKKKLD FFLATGQLPV 240 VAKNSPQNGA KDTSRSTATK NLLVSSNKGS DSTAQSSSGT TDICKTNENS RDQLASSAPP 300 RDMGASLNVI LNSADSECEE CKAASFNIDL SRRNSGSVPK FENSGFNSEA KFENCATNSK 360 PTIDNCGIND EPMFERCEIN NEIDEDKFIG TPLTFETPTY GSLYYEPPQL EGCNPLDSDF 420 LKLCYIDSSP ILSPIRFFTP PCVKSGGLSM QSPESILKMA AKSFPNTPSI FRKRKTEGQK 480 HLHTDKIAKA DRESVKDVVH ASDEQKIINS LEMSESQDGS LCESPTCHGN SIAGANGKAF 540 NASPPYRLRS KRTAVLKSVE KQLEFTFDKE KCDGNTKSME LSTKGSSPVT EDCSHAAKIG 600 VT

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MSSTSVPATT AEATNDEMAG LKLEECCLEN KQSTAASSST SSEGSGSAIV KSPGVCSPAP  60
TSPAHRRATG PIRRAKGGWT AQEDETLRNA VAAFKGKSWK KIAEFFPDRS EVQCLHRWQK  120
VLNPDLIKGP WTQEEDDKII ELVSKYGPTK WSLIAKSLPG RIGKQCRERW HNHLNPDIKK  180
DAWTPEEELA LMKAHQIHGN KWAEIAKVLP GRTDNAIKNH WNSSLKKKLD FFLATGQLPV  240
VAKNSPQNGA KDTSRSTATK NLLVSSNKGS DSTAQSSSGT TDICKTNENS RDQLASSAPP  300
RDMGASLNVI LNSADSECEE CKAASFNIDL SRRNSGSVPK FENSGFNSEA KFENCATNSK  360
PTIDNCGIND EPMFERCEIN NEIDEDKFIG TPLTFETPTY GSLYYEPPQL EGCNPLDSDF  420
LKLCYIDSSP ILSPIRFFTP PCVKSGGLSM QSPESILKMA AKSFPNTPSI FRKRKTEGQK  480
HLHTDKIAKA DRESVKDVVH ASDEQKIINS LEMSESQDGS LCESPTCHGN SIAGANGKAF  540
NASPPYRLRS KRTAVLKSVE KQLEFTFDKE KCDGNTKSME LSTKGSSPVT EDCSHAAKIG  600
VT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-158	MYB family protein