PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023879933.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family ARR-B
Protein Properties Length: 559aa    MW: 62742.8 Da    PI: 6.6867
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023879933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.41.3e-27318372156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++Wt+eLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  XP_023879933.1 318 KMKVDWTQELHKKFVHAVEQL-GVDHAIPSRILELMKVEGLTRHNVASHLQKYRMH 372
                     5689*****************.9*******************************96 PP
2Myb_DNA-binding43.38.4e-14321370248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT+e+++++v+av+qlG +   +++I + m  +g+t+ ++ s++qky+
   XP_023879933.1 321 VDWTQELHKKFVHAVEQLGVDhaIPSRILELMKvEGLTRHNVASHLQKYR 370
                      57***********************************************7 PP
3Response_reg28.29.3e-11201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vd + + +e +r+ le  +y +v ++ +  eal  + +k   +++ ++ +  ++++G+  +k +++++ +lp i+ +     +++ +++  G
  XP_023879933.1  20 VLLVDGDTNSAEEIRSKLEAMDY-IVSTFCNENEALSAILNKPgsFHVAIVEVGTSDSHGS--FKFLETAK-DLPTIMTSNIHCLSTMMKCIAQG 110
                     89*********************.***************888888*****99999988886..77777777.9****9999999*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp ++e+l++
  XP_023879933.1 111 AVEFLRKPLSEEKLRN 126
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    
MVCSANDLQE WKDFPKGLRV LLVDGDTNSA EEIRSKLEAM DYIVSTFCNE NEALSAILNK  60
PGSFHVAIVE VGTSDSHGSF KFLETAKDLP TIMTSNIHCL STMMKCIAQG AVEFLRKPLS  120
EEKLRNIWQH VVHKAFNAGG SNLSESLKPV KESVVSMLQL QLENGEPENR ISMETENESL  180
VHENDKEHSA GSDKYPAPST PQLKQGTRLL DDGDCQDQTN CSIEKESGEQ DGESKSVETT  240
CGDSIGVGTL QEDKLQIPEK NLIKEEEESA DGFKSERKVS HHLHNRDSLS NKGDDCAEKP  300
IKPSQPHNSC GTRANRKKMK VDWTQELHKK FVHAVEQLGV DHAIPSRILE LMKVEGLTRH  360
NVASHLQKYR MHRRHILPKE QERRWPRSRD LMQRNYYQQR PIMAFPPYHS NHTLSPAPIY  420
PVWGQPGIQQ AGAQLWGQPG YPAWQPTNNW HWKPYPGMPA DHAWGCPVVP PTHHPYTSYP  480
QNAAEFHHAG VVDNSCGMPP VDHHPEEEVI DKVVKEAIGK PWLPLPLGLK PPSTDSVLAE  540
LCKQGISTIP PNIKSSKLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-156ARR-B family protein