PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023879691.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 404aa MW: 43615.9 Da PI: 6.4443

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023879691.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	278	300	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H XP_023879691.1 278 HECSVCGAEFTSGQALGGHMRRH 300 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MEAQEEVMMG SRDQTHIVKG KRTKRQRPQS PIPFAMITTT SGDDIIGGGG GGGSGGGGTT 60 TGGDCYNVDI LNTNNIINWS PPATTSTELQ DSTEEEEDMA NCLILLAKGQ SVRGRGESLK 120 QVEEDAAAAS ASASASAYKL NSRRFLEAAG TGIGPGTGMS TGTGADTSNK AGCYIYECKT 180 CNRTFQSFQA LGGHRASHKK TKALAAAAEE KKQFLLSSED DSVEEAQQQQ QQQQVIIKKN 240 NNDHFSSSLS LQLSNSSRGL YSNNNNINRS TNNNNKVHEC SVCGAEFTSG QALGGHMRRH 300 RSPMGTSSST SLSLTAPIAL ESDQYHQEQP PNKKPTHMLS LDLDLNLPAP EDDHDHVHGV 360 EQKFPFAPKQ QQQQQQQQQP QQKQQQQQST SLVFSAPTLV DCHY

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MEAQEEVMMG SRDQTHIVKG KRTKRQRPQS PIPFAMITTT SGDDIIGGGG GGGSGGGGTT  60
TGGDCYNVDI LNTNNIINWS PPATTSTELQ DSTEEEEDMA NCLILLAKGQ SVRGRGESLK  120
QVEEDAAAAS ASASASAYKL NSRRFLEAAG TGIGPGTGMS TGTGADTSNK AGCYIYECKT  180
CNRTFQSFQA LGGHRASHKK TKALAAAAEE KKQFLLSSED DSVEEAQQQQ QQQQVIIKKN  240
NNDHFSSSLS LQLSNSSRGL YSNNNNINRS TNNNNKVHEC SVCGAEFTSG QALGGHMRRH  300
RSPMGTSSST SLSLTAPIAL ESDQYHQEQP PNKKPTHMLS LDLDLNLPAP EDDHDHVHGV  360
EQKFPFAPKQ QQQQQQQQQP QQKQQQQQST SLVFSAPTLV DCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	4e-53	C2H2 family protein