PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023879168.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 543aa MW: 60911.6 Da PI: 8.5186

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023879168.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	45	91	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ av+++ g++Wk+Ia++++ gR++ qc +rwqk+l XP_023879168.1 45 KGGWTEEEDKILAFAVQKFSGKNWKKIAECVP-GRSDVQCLHRWQKVL 91 688***************************.**********986 PP
2	Myb_DNA-binding	49.3	1.1e-15	97	143	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+l+ ++v++ G+ W I++ ++ gR +kqc++rw+++l XP_023879168.1 97 KGPWSKEEDDLICELVAKQGKTKWCEISKSLP-GRIGKQCRERWHNHL 143 79****************************.***********97 PP
3	Myb_DNA-binding	57.7	2.8e-18	150	191	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE+ +l++a++++G++ W+ Ia+ ++ gRt++++k++w+ XP_023879168.1 150 TAWTKEEESILINAHQMYGNK-WAEIAKLLP-GRTENSIKNHWN 191 68*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MEETRECDEK REEGIVSTSS RCGNAILKTV CFQGRMTGPT RRSAKGGWTE EEDKILAFAV 60 QKFSGKNWKK IAECVPGRSD VQCLHRWQKV LNPDLVKGPW SKEEDDLICE LVAKQGKTKW 120 CEISKSLPGR IGKQCRERWH NHLNPNIKKT AWTKEEESIL INAHQMYGNK WAEIAKLLPG 180 RTENSIKNHW NCSVAKKVTV LSSDLYTRET KAESRKPKEV NQIDDQKVNW KGSADNCSLD 240 LVLGIAQGKD SDSKLPRKND KTKLPRTIFD DGSAASLIHQ GNFQKIIHET SEALSGTLQL 300 SLRTPSDVPI CNKTTSNFHQ GPAFPDSGKR LSESFSEPQY NVFSGDYFEN GNSKLSGQFK 360 NSLSYGMTPE VHKENKVVGA AEDTIPGRLC YRPLQWKDLN ILLKTDSFPD TDSYIQTISS 420 PILFHTPPTQ NKGVNVDCSS LDSILRSAAR TFNTPSIIRK RRLQISEKIE YVNHDDYNSE 480 NGGSLSNEKQ LVLPPLKSQK LETSAVKSIE KRLEPAFDAE WDSANIVSRT TVADDSFGAN 540 CGK

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MEETRECDEK REEGIVSTSS RCGNAILKTV CFQGRMTGPT RRSAKGGWTE EEDKILAFAV  60
QKFSGKNWKK IAECVPGRSD VQCLHRWQKV LNPDLVKGPW SKEEDDLICE LVAKQGKTKW  120
CEISKSLPGR IGKQCRERWH NHLNPNIKKT AWTKEEESIL INAHQMYGNK WAEIAKLLPG  180
RTENSIKNHW NCSVAKKVTV LSSDLYTRET KAESRKPKEV NQIDDQKVNW KGSADNCSLD  240
LVLGIAQGKD SDSKLPRKND KTKLPRTIFD DGSAASLIHQ GNFQKIIHET SEALSGTLQL  300
SLRTPSDVPI CNKTTSNFHQ GPAFPDSGKR LSESFSEPQY NVFSGDYFEN GNSKLSGQFK  360
NSLSYGMTPE VHKENKVVGA AEDTIPGRLC YRPLQWKDLN ILLKTDSFPD TDSYIQTISS  420
PILFHTPPTQ NKGVNVDCSS LDSILRSAAR TFNTPSIIRK RRLQISEKIE YVNHDDYNSE  480
NGGSLSNEKQ LVLPPLKSQK LETSAVKSIE KRLEPAFDAE WDSANIVSRT TVADDSFGAN  540
CGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	8e-83	MYB family protein