PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023879166.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 829aa    MW: 89838.8 Da    PI: 6.396
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023879166.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.9e-21122177156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k
  XP_023879166.1 122 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQMK 177
                     688999***********************************************999 PP
2START206.41.1e-643315551206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+Wv+s     e++n +e++++f++  +     + +ea+r++g+v+ ++  lve+l+d++ +W e+++      +t+
  XP_023879166.1 331 ELALTAMDELVKLAQTDEPLWVRSLeggrEILNHEEYMRSFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDSN-RWAEMFPcmiaITSTT 424
                     5899**************************************9998999*9***************************.*******9998899** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvds ++ +  + +v +++lpSg+++++++ng+skvtwveh+
  XP_023879166.1 425 DVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDSIRETSGAPTFVNSRRLPSGCVVQDMPNGYSKVTWVEHA 519
                     ************************************************************999******************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++++h+l+r+l++sg+ +ga++w atlqrqce+
  XP_023879166.1 520 EYDESQVHQLYRPLLSSGMGFGAQRWIATLQRQCEC 555
                     **********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    
MSFGGFLENS TGGGGARIVA DIPFRNSNIN NHHNMPSGAL AQPRLVTPPL TKSMFNSSPG  60
LSLGLHQPNI DGQADMARMA ENFEANVGRR SREEDHESRS GSDNMDGASG DDQDATDKPP  120
RKKRYHRHTP QQIQELEALF KECPHPDEKQ RLELSRRLSL ETRQVKFWFQ NRRTQMKTQL  180
ERHENSLLRQ ENDKLRAENM SIRDAMRNPI CSNCGGPAII GEISLEEQHL RIENARLKDE  240
LDRVCALAGK FLGRPISSLA NSIGPPLPNS SLELGVGSNG FGGLSTVATT LPLGPDFGVG  300
ISSGLPLVTA ARSSAGVTGL DRSIERSMFL ELALTAMDEL VKLAQTDEPL WVRSLEGGRE  360
ILNHEEYMRS FTPCIGLKPN GFVTEASRET GMVIINSLAL VETLMDSNRW AEMFPCMIAI  420
TSTTDVISSG MGGTRNGALQ LMHAELQVLS PLVPVREVNF LRFCKQHAEG VWAVVDVSVD  480
SIRETSGAPT FVNSRRLPSG CVVQDMPNGY SKVTWVEHAE YDESQVHQLY RPLLSSGMGF  540
GAQRWIATLQ RQCECLAILM SSSVPSRDHT AAITAGGRRS MLKLAQRMTD NFCAGVCAST  600
VHKWNKLNAG NVDEDVRVMT RQSVDDPGEP PGIVLSAATS VWLPVSPQRL FDFLRDERLR  660
SEWDILSNGG PMQEMAHIAK GQDHGNCVSL LRASAMNPNQ SSMLILQETC IDAAGSLVVY  720
APVDIPAMHV VMNGGDSAYV ALLPSGFAIV PDGPGSRGPT GNGNNSNNGG GGGGGPGPHR  780
VSGSLLTVAF QILVNSLPTA KLTVESVETV NNLISCTVQK IKAALHCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein