PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023879089.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 766aa MW: 85743.3 Da PI: 5.3957

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023879089.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.7e-07	154	176	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f+++ G C GdrC F Hgp XP_023879089.1 154 VPCIFYQK-GLCLKGDRCAFLHGP 176 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence
MFAATQQPQQ QQHHQQHQHQ KQQQQLPPQQ SQQQQQQQQQ HQVPNTAAST ISSAQEEALK 60 SNTDCVYFLA SPLTCKKGSE CEYRHSDYAR LNPRDCWYWL NGNCLNPKCS FRHPPLDAAL 120 GTQAATSAGS SLPITPTAAT PAAQAPYGSS KQAVPCIFYQ KGLCLKGDRC AFLHGPNPTT 180 SNKVPQMPAA IHVTESSAPK KTFGGPEKFT LEQKIPQINV SKSVGLPPEA KPSPKTEATF 240 PRNVVGVERN VALPSRLDDE ASRYKATHVP PVINGNSISR SSRSQQAHVP EDYSFPNGKD 300 GDEFLRESSP GFDVLVDNEL GDSDYYHGED QFGRTRGHEG RSLNPVNEYD ISHSADYNSI 360 ADVDRERFPD PRSHGSYDHM QGQYAWEQHR ASSERMFVEP APLERRRGYP KSDSPDHVDE 420 SDLRHHLSKQ RRHNGLRSVV SHGHNNHVEE RSYRSSSRRD ALNLPANESS LSNRLRGRIK 480 LPGRSPVNGT DLRPERESDR GRNWDRLSPG RPQISHQGRL RDRIKGRVQE DYNIEGRNIK 540 GPRIWREITD ESGDFARPKR LAELKVVKSS DGKEQQSLGK RKNLEDHQQS EGDLSFEGPK 600 PLSEILKRKR GAGASGSGNS SVYKEDNNQS EIKGSLISGS ENTYTQSAKE ETLSHLFGSE 660 EDFKSTADVS VGTVAEKTDE ASGQPSQAPD LNEFEAEDGM ILDENIEDQE LEADDQRDVD 720 GEYEYEQVDE EGEYNYEEGD NADPEEEYLD DEDGDDFAKK IGVMFS

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence

MFAATQQPQQ QQHHQQHQHQ KQQQQLPPQQ SQQQQQQQQQ HQVPNTAAST ISSAQEEALK  60
SNTDCVYFLA SPLTCKKGSE CEYRHSDYAR LNPRDCWYWL NGNCLNPKCS FRHPPLDAAL  120
GTQAATSAGS SLPITPTAAT PAAQAPYGSS KQAVPCIFYQ KGLCLKGDRC AFLHGPNPTT  180
SNKVPQMPAA IHVTESSAPK KTFGGPEKFT LEQKIPQINV SKSVGLPPEA KPSPKTEATF  240
PRNVVGVERN VALPSRLDDE ASRYKATHVP PVINGNSISR SSRSQQAHVP EDYSFPNGKD  300
GDEFLRESSP GFDVLVDNEL GDSDYYHGED QFGRTRGHEG RSLNPVNEYD ISHSADYNSI  360
ADVDRERFPD PRSHGSYDHM QGQYAWEQHR ASSERMFVEP APLERRRGYP KSDSPDHVDE  420
SDLRHHLSKQ RRHNGLRSVV SHGHNNHVEE RSYRSSSRRD ALNLPANESS LSNRLRGRIK  480
LPGRSPVNGT DLRPERESDR GRNWDRLSPG RPQISHQGRL RDRIKGRVQE DYNIEGRNIK  540
GPRIWREITD ESGDFARPKR LAELKVVKSS DGKEQQSLGK RKNLEDHQQS EGDLSFEGPK  600
PLSEILKRKR GAGASGSGNS SVYKEDNNQS EIKGSLISGS ENTYTQSAKE ETLSHLFGSE  660
EDFKSTADVS VGTVAEKTDE ASGQPSQAPD LNEFEAEDGM ILDENIEDQE LEADDQRDVD  720
GEYEYEQVDE EGEYNYEEGD NADPEEEYLD DEDGDDFAKK IGVMFS