PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023878794.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 781aa MW: 86658.1 Da PI: 4.9125

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023878794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.8	2.2e-12	344	387	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g WT+eEd l++a ++++g W+ Ia ++ R + +c+sr++++l XP_023878794.1 344 GQWTKEEDRELLEAYQKYPGS-WNQIADFVN--RAADNCRSRYRNHL 387 78***************88.****7..99********97 PP
2	Myb_DNA-binding	29.9	1.3e-09	396	457	2	47
SSS-HHHHHHHHHHHHHTTTT.................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.................tWktIartmgkgRtlkqcksrwqky 47 g+W++eE+ ++v v+ + +++ +a+ mg +R++ c+++w+k+ XP_023878794.1 396 GPWSQEEEVKFVAIVNDCLAKiaaelasnstgtpedliNFEVVAQQMG-NRSEQRCRDKWRKL 457 89********************************************.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence
MLSWSEKLFR MGNASSQPSP YAHTKIGQQL GQHGRSAPTS PSQQAVFSQE KHNKHDERAD 60 DAEAVVLAAQ ESRQAEPTKM HRSKRPKARR TGRMRPSIPS EEPSQPSGGE IQTTLSGEQG 120 VLHGSQNSSQ QHETTSQATG EIKRMAKKRK DRMTLSDDEH SGRSPKRSKA NDVNAKSTSV 180 VGVPTVPING SARTSTKVGH EPRSLLGQSS SIRRIKSEST LNGHAAPSDV NLTPSGRAAK 240 LERNATAAIQ HTTSASASAV SQIYQLVGGP TAGKFSEDEI RLIEAIFEHH RVQTGKGDYE 300 MRALIEDWAN VMDFKAEIED MLPNRSKVAL RKFCKRHFTT RNHGQWTKEE DRELLEAYQK 360 YPGSWNQIAD FVNRAADNCR SRYRNHLQLG SNKKTGPWSQ EEEVKFVAIV NDCLAKIAAE 420 LASNSTGTPE DLINFEVVAQ QMGNRSEQRC RDKWRKLTSQ GYVEVEDGVR ASLDPSLSLS 480 RKRDPDAGDQ TVSRIVSQHL AGFEDGDFFD VLTEIHTAFK NHNEEWRDES TLWSEVARVN 540 KGSRFTRRRL RRAAYAAALE KFDARRKLAK QASTIPATAF LLAREIEAKA RQGGLRMSRA 600 YDAQQWKARS ASISESRRSF KSPEIVVDSS ASTPQDAADS DADPPSEGAD DRGDKGESVQ 660 SAARGLPQVK EEPTEEEDSF DDVGDTDDQV GQEVDAKFQL PHPDLQPPFN HKPISTAHDH 720 DIEDNNNDND DDVDDDDDDD DDDDDDDEDD EDEDADEETS SSEELTSEDS TSDESTSDSD 780 S

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence

MLSWSEKLFR MGNASSQPSP YAHTKIGQQL GQHGRSAPTS PSQQAVFSQE KHNKHDERAD  60
DAEAVVLAAQ ESRQAEPTKM HRSKRPKARR TGRMRPSIPS EEPSQPSGGE IQTTLSGEQG  120
VLHGSQNSSQ QHETTSQATG EIKRMAKKRK DRMTLSDDEH SGRSPKRSKA NDVNAKSTSV  180
VGVPTVPING SARTSTKVGH EPRSLLGQSS SIRRIKSEST LNGHAAPSDV NLTPSGRAAK  240
LERNATAAIQ HTTSASASAV SQIYQLVGGP TAGKFSEDEI RLIEAIFEHH RVQTGKGDYE  300
MRALIEDWAN VMDFKAEIED MLPNRSKVAL RKFCKRHFTT RNHGQWTKEE DRELLEAYQK  360
YPGSWNQIAD FVNRAADNCR SRYRNHLQLG SNKKTGPWSQ EEEVKFVAIV NDCLAKIAAE  420
LASNSTGTPE DLINFEVVAQ QMGNRSEQRC RDKWRKLTSQ GYVEVEDGVR ASLDPSLSLS  480
RKRDPDAGDQ TVSRIVSQHL AGFEDGDFFD VLTEIHTAFK NHNEEWRDES TLWSEVARVN  540
KGSRFTRRRL RRAAYAAALE KFDARRKLAK QASTIPATAF LLAREIEAKA RQGGLRMSRA  600
YDAQQWKARS ASISESRRSF KSPEIVVDSS ASTPQDAADS DADPPSEGAD DRGDKGESVQ  660
SAARGLPQVK EEPTEEEDSF DDVGDTDDQV GQEVDAKFQL PHPDLQPPFN HKPISTAHDH  720
DIEDNNNDND DDVDDDDDDD DDDDDDDEDD EDEDADEETS SSEELTSEDS TSDESTSDSD  780
S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	KRMAKKRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	5e-09	MYB family protein