PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023878122.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Protein Properties

Length: 408aa MW: 46947.6 Da PI: 6.3827

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023878122.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	104.2	7e-33	145	247	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k ltpsdv+k++rlv+pk++ae++ g ++ ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++++++ + XP_023878122.1 145 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGDSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERHRTDCDR 239 99*************************966777899*********************************************98889999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ XP_023878122.1 240 LFIGWRRR 247 ****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MSINHYSTDL PETLWWTQLQ LQQYHHHHHQ QQQQQQQQQQ STFMEPNQNP FSSSSSSKPN 60 LSWNPQLYHH QHHQAWLNSQ NSQDPMFRNP NTPFNFNLND ENDNDEDLDD QNPTSQPQEF 120 EQQQQQPDDH HENEEAAAQQ KEHMFEKPLT PSDVGKLNRL VIPKQHAEKY FPLGGDSSDK 180 GLLLSFEDES GKCWRFRYSY WNSSQSYVLT KGWSRYVKEK RLDAGDVVLF ERHRTDCDRL 240 FIGWRRRGTV AAHDSSCGGG GGGGGSSSGG GVVAHNSTSS ACASGAVSEA WTRSFYNTHP 300 YPTHHHHHQQ EQHQHHSQLL PYQPDSCLYA AESSSSPVEN QTTPVGNSKI LRLFGVNLEC 360 QPEDETVPSM LPDHDHNHAS STYQHYYHHQ HDYSSSVPHD HMMRDRRG

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MSINHYSTDL PETLWWTQLQ LQQYHHHHHQ QQQQQQQQQQ STFMEPNQNP FSSSSSSKPN  60
LSWNPQLYHH QHHQAWLNSQ NSQDPMFRNP NTPFNFNLND ENDNDEDLDD QNPTSQPQEF  120
EQQQQQPDDH HENEEAAAQQ KEHMFEKPLT PSDVGKLNRL VIPKQHAEKY FPLGGDSSDK  180
GLLLSFEDES GKCWRFRYSY WNSSQSYVLT KGWSRYVKEK RLDAGDVVLF ERHRTDCDRL  240
FIGWRRRGTV AAHDSSCGGG GGGGGSSSGG GVVAHNSTSS ACASGAVSEA WTRSFYNTHP  300
YPTHHHHHQQ EQHQHHSQLL PYQPDSCLYA AESSSSPVEN QTTPVGNSKI LRLFGVNLEC  360
QPEDETVPSM LPDHDHNHAS STYQHYYHHQ HDYSSSVPHD HMMRDRRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	1e-58	B3 family protein