PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023877758.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family ARF
Protein Properties Length: 867aa    MW: 96641 Da    PI: 6.7939
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023877758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23168269199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      +  ++ +++l  +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_023877758.1 168 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-RQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 259
                     99*****************************73.3334459************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_023877758.1 260 GELRVGVRRA 269
                     99*****996 PP
2Auxin_resp120.31.5e-39294376183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+stk++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+d  rW+nSkWr+Lk
  XP_023877758.1 294 AWHAISTKTMFTVYYKPRTSPAEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGLEDADHERWQNSKWRCLK 376
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    
MSSTEVTGKG NPATAGYNDH HHHHHHNSNS NNNNNSDNRN SSEGQKGHST FSGTSKDAET  60
ALYRELWHAC AGPLVTVPRE NERVFYFPQG HIEQVEASTN QVADKQMPSY DLPDKILCRI  120
INVQLKAEPD TDEVFAQVTL IPEANQDENA VEKEPPPPPP PRFHVHSFCK TLTASDTSTH  180
GGFSVLRRHA DECLPPLDMS RQPPTQELAA KDLHGNEWRF RHIFRGQPRR HLLQSGWSVF  240
VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQGNVPSSV ISSHSMHLGV LATAWHAIST  300
KTMFTVYYKP RTSPAEFIVP YDQYMESIKN NYSIGMRFKM RFEGEEAPEQ RFTGTIVGLE  360
DADHERWQNS KWRCLKVRWD ETSTIPRPER VSPWKIEPAL APPALNPLPM SRPKRPRSTM  420
VPSSPDSSVL TREGSSKVTL DHSPVSGFSR VLQGQEFSTL RGNFAESNES DTAEKSVVWP  480
SSLDDEKNDA GSASKRYGSE SWMASGRHEP TCTDLLSGFG ANADSSNGIC TSFVDQPGVA  540
VNILRKPPVN LEGKYNLLPS PWPFMSSSLS LNFSDSNRKG PAQGGDGVYQ AQGNPRYGGP  600
TEYPALHCHR VEHSQGNWMM PPPSQCFENP VHSRDSMQKP MLVQQCEAVK PKDGNYKLFG  660
IPLISNPVTT EPVVAPRNMM NEPTGHVPHQ AHTLDIDQKS EQWGSKLADH PLPVNEKEKP  720
VQTCQQHSRD VQGKSLGSST RSCTKVHKQG IALGRSVDLT KFNNYEELIA ELDQLFEFGG  780
ELMAPQRNWM IVYTDDEGDM MLVGDDPWQE FCGMVRKIFI YTREEVQKMN PGTLNSKGGE  840
FQSAAEGGDV KEAKSQKLPP ASTAEKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein