PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023877505.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 459aa MW: 51800.6 Da PI: 7.8718

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023877505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.1e-06	33	57	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 yk C+++a+ G C+y +C + H XP_023877505.1 33 YKKIQCSRWAEKGACSYRKKCLYLH 57 78888*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MPCWDRIHKG NCWRGKSCDW SHDPEVLRAG AAYKKIQCSR WAEKGACSYR KKCLYLHEGF 60 VSDKALRKGL GEQVYRLDFV NNSDQFVGDI TPTRCRERGS YSRTVSEESL IVAPGSLPKL 120 IQPSLPKTLR EDVVEYAESA RFQSTSSPYP FRFEPLFEAM RAVGEDTEFL STSIVTGLNC 180 LHRLLQCTSG RPTRKFRVDV EVVGRTIFMS RWEQNLSTLA HMSWTRGHGR GFEQACTETQ 240 EAGKDLSSFH RLVSYKLAGI DLLVQHEVDA CRCTCKGTAW ECDYSEPLTS SVQPAEQAPP 300 NRNVPTPIEA STLRVIKAGT KHSTNCFVEI KSRASGNTDL DDILGQLWLS RCHNLVLGYH 360 QRGTFSPNDV KEEDMTLQLQ QWQQDHADSI SSLVKVLRQL KTIITDAQNS DMSSKFALLY 420 SPGKDRNGLC LYSRLNGQEM LPKDLRSVLE AQESPSNNN

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MPCWDRIHKG NCWRGKSCDW SHDPEVLRAG AAYKKIQCSR WAEKGACSYR KKCLYLHEGF  60
VSDKALRKGL GEQVYRLDFV NNSDQFVGDI TPTRCRERGS YSRTVSEESL IVAPGSLPKL  120
IQPSLPKTLR EDVVEYAESA RFQSTSSPYP FRFEPLFEAM RAVGEDTEFL STSIVTGLNC  180
LHRLLQCTSG RPTRKFRVDV EVVGRTIFMS RWEQNLSTLA HMSWTRGHGR GFEQACTETQ  240
EAGKDLSSFH RLVSYKLAGI DLLVQHEVDA CRCTCKGTAW ECDYSEPLTS SVQPAEQAPP  300
NRNVPTPIEA STLRVIKAGT KHSTNCFVEI KSRASGNTDL DDILGQLWLS RCHNLVLGYH  360
QRGTFSPNDV KEEDMTLQLQ QWQQDHADSI SSLVKVLRQL KTIITDAQNS DMSSKFALLY  420
SPGKDRNGLC LYSRLNGQEM LPKDLRSVLE AQESPSNNN