PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023876505.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27795.2 Da PI: 9.908 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.1 | 6.4e-30 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ien++nrqvtf+kRrng+lKKA+ELS+LC+aeva+iifss+g+lyey+ XP_023876505.1 10 WIENTTNRQVTFCKRRNGLLKKAYELSILCEAEVALIIFSSRGRLYEYA 58 69**********************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MGRGKIEIKW IENTTNRQVT FCKRRNGLLK KAYELSILCE AEVALIIFSS RGRLYEYANN 60 SPSKPREELY LYLAVSQAAV NAALVREEDR LQRPVYFTSR AFRGAEERCP QMEKLAFTLM 120 TAARKLKPYF QVNGSYECKN ERMKKYLEEV KGRIGSLQVK FIQILREENE CADQLAKAAS 180 AEHMLVPNQV LSFVQVSSLI DDGATMQEIG SKSNWTMSLV SYLRNGMLLN KKDATRKLKV 240 QAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 3e-35 | MIKC_MADS family protein |