PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876314.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 401aa MW: 46413.6 Da PI: 8.2932

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876314.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	149	172	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H XP_023876314.1 149 YICKVCGRKCKTNLDLKKHFKQlH 172 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MNLLANSMNT ISPSLLFLHK PFLTYPINLN NNPKLSPRRF QTKCSASTSN GAVYEIDMVK 60 NKQGVYTPKQ KKVVVLWDLD NKPPRGPPYN AAMSLKQLAQ RFGDVIDMSA YANRHAFIHL 120 PQWVVHQRRD RKEVDFFERK GLITPSDPYI CKVCGRKCKT NLDLKKHFKQ LHERERQKKL 180 NRMRSLKGKK RQRFKERFIN GNEKYNEAAR DLVTPKVGYG LASELRRAGV FVKTVEDKPQ 240 AADWALKKQM QHSMSRGVDW LFLVSDDSDF SDMLRRAREA KLGTVVVGDW DRALGRHADL 300 WVPWVRVEKG EVGEKDLLRK KKRTGSEFLE REDELFSVSS LDENAGWNET DLDSLVEEIV 360 GARTEINGVR ISAFDEGEEE DEDGEVDLLW DSEDEEDDEY Y

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MNLLANSMNT ISPSLLFLHK PFLTYPINLN NNPKLSPRRF QTKCSASTSN GAVYEIDMVK  60
NKQGVYTPKQ KKVVVLWDLD NKPPRGPPYN AAMSLKQLAQ RFGDVIDMSA YANRHAFIHL  120
PQWVVHQRRD RKEVDFFERK GLITPSDPYI CKVCGRKCKT NLDLKKHFKQ LHERERQKKL  180
NRMRSLKGKK RQRFKERFIN GNEKYNEAAR DLVTPKVGYG LASELRRAGV FVKTVEDKPQ  240
AADWALKKQM QHSMSRGVDW LFLVSDDSDF SDMLRRAREA KLGTVVVGDW DRALGRHADL  300
WVPWVRVEKG EVGEKDLLRK KKRTGSEFLE REDELFSVSS LDENAGWNET DLDSLVEEIV  360
GARTEINGVR ISAFDEGEEE DEDGEVDLLW DSEDEEDDEY Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	169	RRDRKEVDFFERKGLITPSDPYICKVCGRKCKTNLDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-159	C2H2 family protein