PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876303.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 730aa MW: 82219.8 Da PI: 6.5388

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	1.9e-23	121	221	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ + k++ +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F ++++ XP_023876303.1 121 FCKTLTASDTSTHGGFSVLRRHADEClppldkS-KQPPTQELITKDLHGNEWRFRHIFRGQPKRHLLQSGWSLFVSSKKLVAGDAFIFL--RDET 212 99**************************953.4445569999*****************************************..5699 PP E..EEEEE- CS B3 90 felvvkvfr 98 +el+v+v++ XP_023876303.1 213 GELRVGVRK 221 99**997 PP
2	Auxin_resp	115.6	4.4e-38	247	329	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++++++F v+Y+Pr+s++eF+v+++k+++++k+++s+GmRfkm+fe+e ++e+r+sGtv+g++d++p+rWp+SkWr+Lk XP_023876303.1 247 AWHAVKSNTMFIVYYKPRTSPAEFIVPFDKYMESVKINYSIGMRFKMRFEGEAAPEQRFSGTVIGTEDANPIRWPGSKWRCLK 329 89*******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MASSSFPVTD SEDEIYKELW HACAGPLVTV PRQGELVFYF PQGHIEQVEA TTNQVSEQQL 60 PAYDLPSKIL CRVLNLQLKA EVDTDEVYAQ VTLVPHHQQD ENLVEKEVVA PSPPRPSVHS 120 FCKTLTASDT STHGGFSVLR RHADECLPPL DKSKQPPTQE LITKDLHGNE WRFRHIFRGQ 180 PKRHLLQSGW SLFVSSKKLV AGDAFIFLRD ETGELRVGVR KAMRHSINVP SSVISSHSMH 240 IAVLATAWHA VKSNTMFIVY YKPRTSPAEF IVPFDKYMES VKINYSIGMR FKMRFEGEAA 300 PEQRFSGTVI GTEDANPIRW PGSKWRCLKV QWDEKPSADR PERVSPWKIE LASTPTLDTH 360 PVCRPKRSRV NTAPSSTDSF VSTREDLSKN ITDPSPDKGL LRTVQGQAIS TIGGIFAEPN 420 DSDTAQNPAL WIQSQVSGSH NLHESYGFNW SFIDQNPENA DQLKKHALDQ DQRSNFPGCS 480 QSTMHPFNNM LKCSMKLPAA ATVDQHPGNE LFPLLSTTNM EDTPCSSMLK SQPLLFQNEI 540 LKSKGDDNCK LFGISLISNH KATEPAMPHA DFMHRPQRQI ACSSYQLQDL VSNLQSQQAE 600 CAKPAEITIR DDEWGKPFQA LEQLSRNFHG RLQGSSTRTC IKVHKQGDAV GRSVELTKFD 660 GYNELIAELD HIFEFNGELI APNKKWLVVF TDNDGDLMLV GDDPWQEFCS MAQDISVYTR 720 EEVQKMHPRS

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MASSSFPVTD SEDEIYKELW HACAGPLVTV PRQGELVFYF PQGHIEQVEA TTNQVSEQQL  60
PAYDLPSKIL CRVLNLQLKA EVDTDEVYAQ VTLVPHHQQD ENLVEKEVVA PSPPRPSVHS  120
FCKTLTASDT STHGGFSVLR RHADECLPPL DKSKQPPTQE LITKDLHGNE WRFRHIFRGQ  180
PKRHLLQSGW SLFVSSKKLV AGDAFIFLRD ETGELRVGVR KAMRHSINVP SSVISSHSMH  240
IAVLATAWHA VKSNTMFIVY YKPRTSPAEF IVPFDKYMES VKINYSIGMR FKMRFEGEAA  300
PEQRFSGTVI GTEDANPIRW PGSKWRCLKV QWDEKPSADR PERVSPWKIE LASTPTLDTH  360
PVCRPKRSRV NTAPSSTDSF VSTREDLSKN ITDPSPDKGL LRTVQGQAIS TIGGIFAEPN  420
DSDTAQNPAL WIQSQVSGSH NLHESYGFNW SFIDQNPENA DQLKKHALDQ DQRSNFPGCS  480
QSTMHPFNNM LKCSMKLPAA ATVDQHPGNE LFPLLSTTNM EDTPCSSMLK SQPLLFQNEI  540
LKSKGDDNCK LFGISLISNH KATEPAMPHA DFMHRPQRQI ACSSYQLQDL VSNLQSQQAE  600
CAKPAEITIR DDEWGKPFQA LEQLSRNFHG RLQGSSTRTC IKVHKQGDAV GRSVELTKFD  660
GYNELIAELD HIFEFNGELI APNKKWLVVF TDNDGDLMLV GDDPWQEFCS MAQDISVYTR  720
EEVQKMHPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	0.0	ARF family protein