PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876059.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 605aa MW: 65829.2 Da PI: 9.3758

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876059.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.3	2.7e-13	396	442	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRd+iN+++ L+e++P++ K+ ++iL +A+eY k Lq XP_023876059.1 396 VHNFSERRRRDKINKKMRALKEIIPNC-----SKVGRVSILDEAIEYTKTLQ 442 59**********************9.....79999********99998 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MLESTKPRMT SSLSSLASTS EDDFVELVWE NGEIFKRDRS GKTQKGHSCI GYNLFPSHAQ 60 VENRANVHMK RARLGNESSF SDFLGHKDGD LDFTSNNSSQ NGYHLDSFSG LSKCKLEQNN 120 SKSKDKHPKD SQVVLKHDTA NFRHGNASKF VLRNSKLATS RSTQLHPPSL FGQDSDSLVT 180 MGGLLKSTLP EHDSLPDKKT GTVKVSYLRP AALPTVNSQC SGVIRQASSL VLSRAEELKG 240 SSDERPALFS SNPFESTVIE LGSGSKTVLQ NQPDAELTAP ISKTKESLPD EHSEAFGRRN 300 HKSHDQLLGQ ASRLAANTPG EKPNIQQFIE PLVASSSIYS LGASNEPTYS LRRTYDDTEE 360 SEYRSEVITK NIEEPQTKQA PARGGTGTKR SRTAEVHNFS ERRRRDKINK KMRALKEIIP 420 NCSKVGRVSI LDEAIEYTKT LQLQLKIMSM GAVVYMPPMM SPMLMQHINA PHLTHFSPMG 480 TGMGMRMGTR MGCSPTQFPT SQVGATALPG ITGTGFQMLG LPGQSLPMSV SHAPFIPMIG 540 GSSTQSFPAS GISGAAPPVE CASLTSSKGS IQNINSELMN NANTECSKIQ TSSQLAATSV 600 QKIIY

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MLESTKPRMT SSLSSLASTS EDDFVELVWE NGEIFKRDRS GKTQKGHSCI GYNLFPSHAQ  60
VENRANVHMK RARLGNESSF SDFLGHKDGD LDFTSNNSSQ NGYHLDSFSG LSKCKLEQNN  120
SKSKDKHPKD SQVVLKHDTA NFRHGNASKF VLRNSKLATS RSTQLHPPSL FGQDSDSLVT  180
MGGLLKSTLP EHDSLPDKKT GTVKVSYLRP AALPTVNSQC SGVIRQASSL VLSRAEELKG  240
SSDERPALFS SNPFESTVIE LGSGSKTVLQ NQPDAELTAP ISKTKESLPD EHSEAFGRRN  300
HKSHDQLLGQ ASRLAANTPG EKPNIQQFIE PLVASSSIYS LGASNEPTYS LRRTYDDTEE  360
SEYRSEVITK NIEEPQTKQA PARGGTGTKR SRTAEVHNFS ERRRRDKINK KMRALKEIIP  420
NCSKVGRVSI LDEAIEYTKT LQLQLKIMSM GAVVYMPPMM SPMLMQHINA PHLTHFSPMG  480
TGMGMRMGTR MGCSPTQFPT SQVGATALPG ITGTGFQMLG LPGQSLPMSV SHAPFIPMIG  540
GSSTQSFPAS GISGAAPPVE CASLTSSKGS IQNINSELMN NANTECSKIQ TSSQLAATSV  600
QKIIY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	401	406	ERRRRD
2	402	407	RRRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	4e-36	bHLH family protein