PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023875720.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 386aa MW: 42913.1 Da PI: 5.853

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023875720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.7e-16	40	85	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+ eEd +l ++v ++G ++W++Iar++ gR++k+c++rw + XP_023875720.1 40 KGPWSLEEDTILSRLVSKFGARNWTLIARRIA-GRSGKSCRLRWCNQ 85 79****************************.*********985 PP
2	Myb_DNA-binding	59.5	7.2e-19	92	136	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd+++v a++ +G++ W++Iar ++ gRt++ +k++w++ XP_023875720.1 92 RKPFTDEEDQIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 136 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MVAVNSSEVG STMERERERE MEVDEEEEIT VVLEGRDKVK GPWSLEEDTI LSRLVSKFGA 60 RNWTLIARRI AGRSGKSCRL RWCNQLDPTV KRKPFTDEED QIIVAAHAIH GNKWAAIARL 120 LPGRTDNAIK NHWNSTLKRQ RMGVGKIKSE SCNMVEDSLD KTKASSEETL SCGDVNSFKS 180 LEGRDMSSLE DMNDQNEDKV PIEGHFNHEI IDQSTLFRPV ARVSAFSVCN PFDGLEPASS 240 FPRPVPMQGP LVQASKPDVD ICKLFEGVCG ERLVPHNCGH GCCGTQNDRN PRNSLLGPEF 300 VEFSEPPSFP SLELAAIATD ISKLAWLKSG LENSSVRAMD DAAGRIKSHG SQVQMRHLEE 360 XKVNGHFCFD EGNNRLTGMK TNVLST

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MVAVNSSEVG STMERERERE MEVDEEEEIT VVLEGRDKVK GPWSLEEDTI LSRLVSKFGA  60
RNWTLIARRI AGRSGKSCRL RWCNQLDPTV KRKPFTDEED QIIVAAHAIH GNKWAAIARL  120
LPGRTDNAIK NHWNSTLKRQ RMGVGKIKSE SCNMVEDSLD KTKASSEETL SCGDVNSFKS  180
LEGRDMSSLE DMNDQNEDKV PIEGHFNHEI IDQSTLFRPV ARVSAFSVCN PFDGLEPASS  240
FPRPVPMQGP LVQASKPDVD ICKLFEGVCG ERLVPHNCGH GCCGTQNDRN PRNSLLGPEF  300
VEFSEPPSFP SLELAAIATD ISKLAWLKSG LENSSVRAMD DAAGRIKSHG SQVQMRHLEE  360
XKVNGHFCFD EGNNRLTGMK TNVLST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-109	MYB family protein