PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023875609.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 753aa    MW: 83625.8 Da    PI: 5.9172
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023875609.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21100155156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  XP_023875609.1 100 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 155
                     7999************************************************9877 PP
2START231.62.2e-722694922206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     + ++a++el k+a+a+ep+W +s+    e++n+de++++f+ +++      +s+ea+r++gvv+ +l++lv++++d++ qW+e+++    ka+t+
  XP_023875609.1 269 IVNQAMEELTKMATAGEPLWIRSVetgrEILNYDEYMKEFSIENSsnarpkRSIEASRETGVVFVDLPRLVQSFMDVN-QWKEMFPclisKAATV 362
                     56789************************************9999*********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vis+g      ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvS++  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh 
  XP_023875609.1 363 DVISNGegpnknGAVQLMFAELQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIEKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHL 456
                     ************************************************************98.9******************************* PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++ +h ++r +v+sgla+ga++w+atlq qce+
  XP_023875609.1 457 ECQKSPVHTMYRTIVNSGLAFGARHWMATLQLQCER 492
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    
MGVDMSNNPP SSRTKDFFAS PALSLSLAGI FRDAGAAATP NMEVEEGDEG SGGGGRRDDM  60
VEISSENSEP LRSRSDDEFD GEGEPDDDGA DGDKSKKKKR KKYHRHTAEQ IREMEALFKE  120
SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR RTQIKAIQER HENSLLKTEM EKLRDENKAM  180
REQINKACCP NCGTATTSRE AALTTEEQQL RIENARLKAE VEKLRSALGK YPPGASSPSC  240
SAGNDQENRS SLDFYTGIFG IEKTRIMEIV NQAMEELTKM ATAGEPLWIR SVETGREILN  300
YDEYMKEFSI ENSSNARPKR SIEASRETGV VFVDLPRLVQ SFMDVNQWKE MFPCLISKAA  360
TVDVISNGEG PNKNGAVQLM FAELQMLTPM VPTREVYFVR FCKQLSAEQW AIVDVSIEKV  420
EDNIDASLVK CRKRPSGCII EDKSNGHCKV IWVEHLECQK SPVHTMYRTI VNSGLAFGAR  480
HWMATLQLQC ERLVFFMATN VPMKDSTGVA TLAGRKSILK LAQRMTWNFC RAIGASSYHT  540
WTKVSSKTGE DIRITSRKNL NDPGEPLGVI LCAVSSVWLP VSPHVLFDFL RDEAHRSEWD  600
IMSSGGPAQS IANLAKGQDR GNSVAIQTMK SKENSMWVLQ DGCTNAYESM VVYAPVDITG  660
MQSVMTGCDS SNMAILPSGF SILPDGVESR PLVITSRQEE KSTEGGSLLT IAIQILTNTS  720
PTAKLSVESV ESVNTLISCT LRNIKTSLQC EDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101KKKKRK
296102KKKKRKK
398102KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein