PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023875197.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 310aa    MW: 35234.8 Da    PI: 6.1857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023875197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.3e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd +l  +++++G  +W+  ++  g+ R++k+c++rw +yl
   XP_023875197.1 14 KGAWSVEEDNKLRSYIHRFGHWNWRELPKFAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding52.21.4e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+eE++ +++++++lG++ W+ Ia+ ++ gR+++++k++w+ +
   XP_023875197.1  67 RGNYTEEEELMIIKLHEELGNK-WSMIAASLP-GRSDNDIKNHWHAH 111
                      899*******************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MVRAPFYDKN GLKKGAWSVE EDNKLRSYIH RFGHWNWREL PKFAGLSRCG KSCRLRWMNY  60
LQPNVKRGNY TEEEELMIIK LHEELGNKWS MIAASLPGRS DNDIKNHWHA HLKKRAKKNP  120
TKSKMKTLSN EAYQHDADIA RKTETDSSVS SSSPYQVQES SQLPLETSSS EFSYLSFDNA  180
PIFGINWTAE DSLATFKTLE QSFSDFWTEP FILDNTYIQN KYPESLANAG FSASQSCYNE  240
GIDSIYEAMQ EVENYQRINE DPYLVNYEST NGSDLKDTSG GSDRISNGRG EGSEGGSGDG  300
NGDGFRSKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-55MYB family protein