PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023875140.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 669aa MW: 71362 Da PI: 7.5554

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023875140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	261	283	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C++ F+r++nLk+H+ tH XP_023875140.1 261 HKCPYCSTDFTRHHNLKSHLLTH 283 79*******************99 PP
2	zf-C2H2	15.3	5.8e-05	289	311	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C +F+r ++LkrH ++H XP_023875140.1 289 YVCSTCQARFRRLHDLKRHSKLH 311 9******************9998 PP
3	zf-C2H2	15.2	6.2e-05	317	336	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C +Cg+ F r + L rH XP_023875140.1 317 HTCDKCGRKFARGDALARHN 336 79*****************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MADTARATTS RTEPFPPLDA GPPATVTAPD LVPAPPTINV VADDDSTPSH STPATSHVPG 60 AAHLSVKSAK ESLPGAAALQ LTGQAAMADL KRRNKQKAAE EARQTSPNPQ VEAMQTLMGG 120 AAQSRASDGS DSDKLSEPMR RVAEQITVPT ITSDEPLQAS PTSLTSFGTL ESNGADVAMT 180 ATAGGSLNSA TAAHATQRTD GATYSENNGH LGVATEDGDK AFSYPGPSQP DRGQANGPSR 240 GMSHPGFGQD SPKSSASNKR HKCPYCSTDF TRHHNLKSHL LTHSQEKPYV CSTCQARFRR 300 LHDLKRHSKL HTGERPHTCD KCGRKFARGD ALARHNKGPG GCAGRRSSFP GDDDYNGDGT 360 DHMDGLEYGG DEDDDDENHG RRVSEPSRKR THLETPQDTA REVYRQHSST YPGSSHARPH 420 GSSLSSMGPP QVNPHHAQGP LASPRELSGY PDPTNPTSSM SSVHYGNPGQ VLNHSSMIES 480 PKPLSPGHPP EQHRLSVGDA SMSSIRNRSP SLTTQFQQTH FGRGTGGRTP PQSTPQFGSN 540 QQHTSVLPPL QHPNQLQGRS GLQPSAMTAN HGSSMLHHQQ PAPALTSGGV QGANAGSLSS 600 HGKSSGGSMR DIVGQDVDIW TYVRTLEQRF SRMQDEYELR ISRLQEEVIS LKGQVSNGGS 660 YSSEINQRY

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MADTARATTS RTEPFPPLDA GPPATVTAPD LVPAPPTINV VADDDSTPSH STPATSHVPG  60
AAHLSVKSAK ESLPGAAALQ LTGQAAMADL KRRNKQKAAE EARQTSPNPQ VEAMQTLMGG  120
AAQSRASDGS DSDKLSEPMR RVAEQITVPT ITSDEPLQAS PTSLTSFGTL ESNGADVAMT  180
ATAGGSLNSA TAAHATQRTD GATYSENNGH LGVATEDGDK AFSYPGPSQP DRGQANGPSR  240
GMSHPGFGQD SPKSSASNKR HKCPYCSTDF TRHHNLKSHL LTHSQEKPYV CSTCQARFRR  300
LHDLKRHSKL HTGERPHTCD KCGRKFARGD ALARHNKGPG GCAGRRSSFP GDDDYNGDGT  360
DHMDGLEYGG DEDDDDENHG RRVSEPSRKR THLETPQDTA REVYRQHSST YPGSSHARPH  420
GSSLSSMGPP QVNPHHAQGP LASPRELSGY PDPTNPTSSM SSVHYGNPGQ VLNHSSMIES  480
PKPLSPGHPP EQHRLSVGDA SMSSIRNRSP SLTTQFQQTH FGRGTGGRTP PQSTPQFGSN  540
QQHTSVLPPL QHPNQLQGRS GLQPSAMTAN HGSSMLHHQQ PAPALTSGGV QGANAGSLSS  600
HGKSSGGSMR DIVGQDVDIW TYVRTLEQRF SRMQDEYELR ISRLQEEVIS LKGQVSNGGS  660
YSSEINQRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	8e-09	C2H2 family protein