PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023874371.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Protein Properties

Length: 392aa MW: 44884.2 Da PI: 8.6149

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023874371.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.9	8.6e-14	36	116	10	94
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 vl++++l+lp f++++g + s t++ ++gr+W++ l +k +++++++GW +F + + + g +++Fk++g+s+f+ ++ XP_023874371.1 36 VLNEKILRLPEIFLQKFGDQ--LSSIATVNGPNGRVWQLGL--EKDENGTWFSDGWDKFLDYHSISNGHILIFKYEGNSSFNVLF 116 578889*******99877..77799**********..**********************************997665 PP
2	B3	52.3	1e-16	291	386	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+ ++ ++ ++ +++p fa ++ + e + l+d++g+ + ++ yr +sg+ ++kGW F+++++L+egD++vF+l++r++ l v XP_023874371.1 291 FFKAILRRHNIYNSFVYVPAGFAMKYL-P-SE--SIALQDSEGKLFPARCFYREGSGAgRSIGKGWATFAREHDLEEGDVLVFELINRETIVLEV 381 89999999*************9994.3.23..5*************888888899*********************999999* PP EEE-S CS B3 95 kvfrk 99 ++fr+ XP_023874371.1 382 HIFRA 386 **996 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MASWPRTRRM GVESTDKRER RCKYPTRDPE TFFKIVLNEK ILRLPEIFLQ KFGDQLSSIA 60 TVNGPNGRVW QLGLEKDENG TWFSDGWDKF LDYHSISNGH ILIFKYEGNS SFNVLFMFDM 120 TAGKIDYPID SLSSDAEPNS VANEEEEKDF GYNDISVSTT YSPSQNSSES WSSDEYFSQG 180 VLKKRNKYTT WTDRKKRHIR KGACSGGQAA TQSCDKCGHH KESEFAKFDE EAAKTPKEDR 240 FYSSGKRNPK SKYKVDDFSA TSGFSKFSKT IQAARKRARK AADMFQSEYP FFKAILRRHN 300 IYNSFVYVPA GFAMKYLPSE SIALQDSEGK LFPARCFYRE GSGAGRSIGK GWATFAREHD 360 LEEGDVLVFE LINRETIVLE VHIFRAIDYS GM

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MASWPRTRRM GVESTDKRER RCKYPTRDPE TFFKIVLNEK ILRLPEIFLQ KFGDQLSSIA  60
TVNGPNGRVW QLGLEKDENG TWFSDGWDKF LDYHSISNGH ILIFKYEGNS SFNVLFMFDM  120
TAGKIDYPID SLSSDAEPNS VANEEEEKDF GYNDISVSTT YSPSQNSSES WSSDEYFSQG  180
VLKKRNKYTT WTDRKKRHIR KGACSGGQAA TQSCDKCGHH KESEFAKFDE EAAKTPKEDR  240
FYSSGKRNPK SKYKVDDFSA TSGFSKFSKT IQAARKRARK AADMFQSEYP FFKAILRRHN  300
IYNSFVYVPA GFAMKYLPSE SIALQDSEGK LFPARCFYRE GSGAGRSIGK GWATFAREHD  360
LEEGDVLVFE LINRETIVLE VHIFRAIDYS GM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	201	LKKRNKYTTWTDRKKRHIRK
2	183	196	KKRNKYTTWTDRKK
3	183	197	KKRNKYTTWTDRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	8e-25	B3 family protein