PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023874360.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Protein Properties

Length: 418aa MW: 48088.7 Da PI: 9.1724

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023874360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.2	1.1e-16	6	96	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f +l+ s + +s++l++p kf+ + + s +tl ++g +W+v l +k +++ ++ +GW++Fv+ +++g f+vF+++g+s+f +v++f+ XP_023874360.1 6 FHKLILSTTIQSKQLRIPEKFVMKVRDD--LSPVVTLSVPDGHVWQVGL--KKVDNSAWFHNGWQDFVEHYSIRVGYFLVFRYEGNSSF--FVHIFN 96 5567788999999*******999655..5668***********..9999*****************************999..999986 PP
2	B3	56.3	5.7e-18	303	384	4	89
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ yr+++ l++GW eF +n+L egD++vF+l + +e XP_023874360.1 303 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQTSEGRQWPVRCLYRGGR--AKLSQGWYEFSLENNLGEGDVCVFELLKMRE 384 78899****************866743...5***********665555..66*********************876444 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MPRPYFHKLI LSTTIQSKQL RIPEKFVMKV RDDLSPVVTL SVPDGHVWQV GLKKVDNSAW 60 FHNGWQDFVE HYSIRVGYFL VFRYEGNSSF FVHIFNLANS EVNYQNNTPG GPQGISYASH 120 YRVFEEMEDD DFAEILGSTP TTASLKNKLF GERGDLLTPN KSYNPPSLQN LFNGSKLKNC 180 LNWAGDGNMH PSKVVDKSSS EIHHTREIGV QFNATELKKS LDEVKLQSAD QEIQKLKKTM 240 RKKRKNDPNE QESSARHEEE VDMRFRFYES ASARKRTVTA EERERAINAA KAFEPTNPFC 300 RVVLRPSYLY RGCIMYLPSC FAEKNLSGVS GFIKLQTSEG RQWPVRCLYR GGRAKLSQGW 360 YEFSLENNLG EGDVCVFELL KMREIVLKVT TYRVLDDNGL VVNQPLMQHV NHLKLIRN

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MPRPYFHKLI LSTTIQSKQL RIPEKFVMKV RDDLSPVVTL SVPDGHVWQV GLKKVDNSAW  60
FHNGWQDFVE HYSIRVGYFL VFRYEGNSSF FVHIFNLANS EVNYQNNTPG GPQGISYASH  120
YRVFEEMEDD DFAEILGSTP TTASLKNKLF GERGDLLTPN KSYNPPSLQN LFNGSKLKNC  180
LNWAGDGNMH PSKVVDKSSS EIHHTREIGV QFNATELKKS LDEVKLQSAD QEIQKLKKTM  240
RKKRKNDPNE QESSARHEEE VDMRFRFYES ASARKRTVTA EERERAINAA KAFEPTNPFC  300
RVVLRPSYLY RGCIMYLPSC FAEKNLSGVS GFIKLQTSEG RQWPVRCLYR GGRAKLSQGW  360
YEFSLENNLG EGDVCVFELL KMREIVLKVT TYRVLDDNGL VVNQPLMQHV NHLKLIRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	245	LKKTMRKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-136	B3 family protein