PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023873978.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 469aa MW: 51353.8 Da PI: 4.9909

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023873978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	364	401	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_023873978.1 364 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 401 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MAEEFQTGIC GGNWWMNPSR STFTGSSSPC SMALNDTGSY AWSDMGDMKG RPCEETNSVS 60 DSSIVFQDVQ KPQQQADSGS GCGSSSILID STLQMMGFGL SSSSTTSDWN QALLRNSGRA 120 ESNYNSMLQE EMNSRLNYQQ ERGVDSTQIQ KNWSPKNLSN GGDQQDNSSI TAFKSSISQD 180 FSLDTVSSST GNCTVTCQGL STSFPVGSAS YGYPSTLIQS LFDPDPQPQQ SLFNNRSLSY 240 SSTTNFGANT NELSPTWPRF APFLPKQQPC GLHFTNNTPF WNASTAVATA GLNDSIRDGV 300 FPSPPSQYLV PTFEEKPKCS NHTTKPIIED VQDSVSVVKK SVNEPVFKRP RIETPSPLPT 360 FKVRKEKLGD RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVLSTPY MKNGTPIQHQ 420 QGCDKLDTEG PKQDLRTRGL CLVPISSTYP VANETTADFW TPTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MAEEFQTGIC GGNWWMNPSR STFTGSSSPC SMALNDTGSY AWSDMGDMKG RPCEETNSVS  60
DSSIVFQDVQ KPQQQADSGS GCGSSSILID STLQMMGFGL SSSSTTSDWN QALLRNSGRA  120
ESNYNSMLQE EMNSRLNYQQ ERGVDSTQIQ KNWSPKNLSN GGDQQDNSSI TAFKSSISQD  180
FSLDTVSSST GNCTVTCQGL STSFPVGSAS YGYPSTLIQS LFDPDPQPQQ SLFNNRSLSY  240
SSTTNFGANT NELSPTWPRF APFLPKQQPC GLHFTNNTPF WNASTAVATA GLNDSIRDGV  300
FPSPPSQYLV PTFEEKPKCS NHTTKPIIED VQDSVSVVKK SVNEPVFKRP RIETPSPLPT  360
FKVRKEKLGD RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVLSTPY MKNGTPIQHQ  420
QGCDKLDTEG PKQDLRTRGL CLVPISSTYP VANETTADFW TPTFGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-68	bHLH family protein