PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023873654.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 153aa    MW: 16994.1 Da    PI: 8.4606
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023873654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.8e-115981527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                     C++f +tG+C+yGd+Ck+ H++
  XP_023873654.1 59 VCNRFVKTGFCQYGDSCKYVHPK 81
                    6********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MPLGKYYCDY CDKEFQDTPY VRKRHLQGLQ HLRNKALWFD SFQFKDANQA YTEGFGKGVC  60
NRFVKTGFCQ YGDSCKYVHP KNNLANVNTQ GISVTGFVDN NQSPIIPGNR SVGGSFSGDV  120
VRDNMGMSLG NLPPSLKPPP EGGYPSLPSV DWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-47C3H family protein