PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023873091.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 1000aa MW: 112138 Da PI: 5.013

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023873091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_023873091.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.7e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_023873091.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHR KRKRRGIDYN AEIPFEKKAP AGFFDVSEEN RPVDLVKFPV 240 TIEELEGKRR NDVEAQLRKQ DVAKNKIAQR QDAPSSILQA NKMNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMGYASDLL AGSEEVSEGS GATRALLANY AQTPQPGMTP LRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKRELQTPNP MLTPSATPGA 420 AGLTPRIGMT PSRDGYSFSM TPKGTPLRDE LHINEGMDIH ESVKLEQRRQ ADLRRNLRSG 480 LTNLPQPKND YQIVMQPVPE DNEEQEEKIE EDMSDRIARE RAEEEARQQA LLRKRSKVLQ 540 RELPRPPAAS LDLIRNSLMR ADGDKSSFVP PTSIEQADEI IRKELLALLD HDNAKYPLDK 600 KMNKEKKKGS KRSADGYTTS VPEIEDFEED ELKEADSLIK EEAQYLRVAM GHEDQSLDEF 660 VEAHKTCLGD LMYFPTRGAY GLSSVAGNME KLAALQNEFD NVKRKMDGDK AKAETLGKKV 720 EILTQGYEKR ARMGLWPQIE ATIKLMDTAA TELECFKALQ KQEQLAASYR INGIQEEVQK 780 QKELERTLQG RYGDLVAELE RVQSLMEKYR VQAQKEEEIA AKNRALELAE AEEGKTVVPS 840 TETPVPIASD EQHGSSVPVG PSHNENEGQQ MDASRSPKTD MDVDVEKEHE TLCIDTTVVP 900 DNGPECSDNK LSESDRNPGG VLDMIVENDK MITNLVDDAA GDSSTGTEVA KEAQDIEDQL 960 NVVEAGKLDG VLTKQEDQVS EASGNDDFGS GDAMQVSGGK

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRHR KRKRRGIDYN AEIPFEKKAP AGFFDVSEEN RPVDLVKFPV  240
TIEELEGKRR NDVEAQLRKQ DVAKNKIAQR QDAPSSILQA NKMNDPETVR KRSKLMLPAP  300
QISDHELEEI AKMGYASDLL AGSEEVSEGS GATRALLANY AQTPQPGMTP LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKRELQTPNP MLTPSATPGA  420
AGLTPRIGMT PSRDGYSFSM TPKGTPLRDE LHINEGMDIH ESVKLEQRRQ ADLRRNLRSG  480
LTNLPQPKND YQIVMQPVPE DNEEQEEKIE EDMSDRIARE RAEEEARQQA LLRKRSKVLQ  540
RELPRPPAAS LDLIRNSLMR ADGDKSSFVP PTSIEQADEI IRKELLALLD HDNAKYPLDK  600
KMNKEKKKGS KRSADGYTTS VPEIEDFEED ELKEADSLIK EEAQYLRVAM GHEDQSLDEF  660
VEAHKTCLGD LMYFPTRGAY GLSSVAGNME KLAALQNEFD NVKRKMDGDK AKAETLGKKV  720
EILTQGYEKR ARMGLWPQIE ATIKLMDTAA TELECFKALQ KQEQLAASYR INGIQEEVQK  780
QKELERTLQG RYGDLVAELE RVQSLMEKYR VQAQKEEEIA AKNRALELAE AEEGKTVVPS  840
TETPVPIASD EQHGSSVPVG PSHNENEGQQ MDASRSPKTD MDVDVEKEHE TLCIDTTVVP  900
DNGPECSDNK LSESDRNPGG VLDMIVENDK MITNLVDDAA GDSSTGTEVA KEAQDIEDQL  960
NVVEAGKLDG VLTKQEDQVS EASGNDDFGS GDAMQVSGGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDNRHRKRKRR
2	200	205	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein