PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023873043.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HB-other

Protein Properties

Length: 716aa MW: 77996.1 Da PI: 6.6958

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023873043.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.6e-21	63	117	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +kR++ t++ql +Le +F+kn++p+a re++A+ +++ter V++WFqNrRak k XP_023873043.1 63 QKRQRATQDQLMTLEVEFNKNPTPTALVRERIAQDINMTERSVQIWFQNRRAKIK 117 69***************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MADVMQAPTD LSAYHQPVMG DEEGGKAMMP PHSRTGTPSN SSMHANSRRP PRKSTLTQQQ 60 KNQKRQRATQ DQLMTLEVEF NKNPTPTALV RERIAQDINM TERSVQIWFQ NRRAKIKNIA 120 KRSIESGEDC DSIPDSMRQY LAMQAYGPSS KGFAPGTGRA GPTFSSYAGG TLCLNADPAN 180 GKVVIQHFAC RSLSIGTWRR VGQSTMDLVI FYSPDKACVT YYIHNDNAGY KIEYPFAWIK 240 TISLEQGDVL SAAEGASQRS GGLLIELTRP PKFYMDSSGM GGFYECGDFT EDQQASQIML 300 HHLGGPSKVL SGQLAKLVSL DAYQNRHNTF DPNTFAVSAP VSPMRPASQP NHVVHPHHPA 360 AMFQQDNTMG LMGPPAPRGH KRQRSRSVPA ALDFSQLRHP VPSFLIQHEG QPAPATMQDL 420 NIYAPVPQPH HPTGFAPELM PMAPGPNLSI DTSAVYGTPM TFCPPMSATT ANSPSEFGTP 480 AFFAPTQAGD NMPNAHFGTP FHSGFLAVEP GAMIGTSNTP LSMTSHGDPV IADHSPPLSV 540 GRSQSTGDIF ATPGEHSQFG DEGVYLAESF NKQMALPFRG PLGDQAFHSP LPHGDFDFTT 600 SSGPGSMSFE CGPTQIHDGS MSFHSPTQHQ GSQHQDSAVS FSTPEQSMMF HSPKDNAMLY 660 QDSKVYSSPG QMQQHPDEHQ NIYQHTHLVP GSSGDDMLTM YGTIDPHNLG NHHQQQ

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MADVMQAPTD LSAYHQPVMG DEEGGKAMMP PHSRTGTPSN SSMHANSRRP PRKSTLTQQQ  60
KNQKRQRATQ DQLMTLEVEF NKNPTPTALV RERIAQDINM TERSVQIWFQ NRRAKIKNIA  120
KRSIESGEDC DSIPDSMRQY LAMQAYGPSS KGFAPGTGRA GPTFSSYAGG TLCLNADPAN  180
GKVVIQHFAC RSLSIGTWRR VGQSTMDLVI FYSPDKACVT YYIHNDNAGY KIEYPFAWIK  240
TISLEQGDVL SAAEGASQRS GGLLIELTRP PKFYMDSSGM GGFYECGDFT EDQQASQIML  300
HHLGGPSKVL SGQLAKLVSL DAYQNRHNTF DPNTFAVSAP VSPMRPASQP NHVVHPHHPA  360
AMFQQDNTMG LMGPPAPRGH KRQRSRSVPA ALDFSQLRHP VPSFLIQHEG QPAPATMQDL  420
NIYAPVPQPH HPTGFAPELM PMAPGPNLSI DTSAVYGTPM TFCPPMSATT ANSPSEFGTP  480
AFFAPTQAGD NMPNAHFGTP FHSGFLAVEP GAMIGTSNTP LSMTSHGDPV IADHSPPLSV  540
GRSQSTGDIF ATPGEHSQFG DEGVYLAESF NKQMALPFRG PLGDQAFHSP LPHGDFDFTT  600
SSGPGSMSFE CGPTQIHDGS MSFHSPTQHQ GSQHQDSAVS FSTPEQSMMF HSPKDNAMLY  660
QDSKVYSSPG QMQQHPDEHQ NIYQHTHLVP GSSGDDMLTM YGTIDPHNLG NHHQQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	381	386	KRQRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	2e-08	HD-ZIP family protein