PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023872645.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GRF

Protein Properties

Length: 619aa MW: 67013.3 Da PI: 8.3717

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023872645.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	222	266	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_023872645.1 222 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 266 79****************************************985 PP
2	QLQ	64.3	3e-22	152	188	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyL an+PvP++Ll +i+k XP_023872645.1 152 GPFTPSQWMELEHQALIYKYLTANMPVPSNLLIPIRK 188 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MDFGVVGLDG LVGSEATGFS SLASDPETKQ KWYGSGLFKQ ERSSNSEDDW RSSKLLKTDD 60 FIASKTMQLQ HRNTLLRSNY TTLYSDGQQQ QQQMLSFSSP KSESFLAEKN SHNATLLPYF 120 HHSLSGYGKN TGYSSGSLNG TSMHGALAGA RGPFTPSQWM ELEHQALIYK YLTANMPVPS 180 NLLIPIRKAL DSAGFSSFPG GLLRPNTLGW GSFHLGFSNN TDPEPGRCRR TDGKKWRCSR 240 DAVADQKYCE RHMNRGRHRS RKPVEGQTGH AVSGTATTTA TTSTSTSSTI SKLSPIASSS 300 SASVVVPGGA SNSLAIAAHQ QLKNLQPGAS NPSAATTINR MFINKDNVGE RMQDTPGLSI 360 LSSSIDHKPK EDSFMIQKQQ IPYEESTRTE FGLVTSDALL NPSNKSSSLM NCSSQELSDR 420 RTESQQSLRH FIDDWPKIQS DRSSVSWPEL DMQSDRTQLS ISIPMASSDF ISSTSSPSSN 480 DKPALSPLRL SRELDPIRMG LGVSSIINEP NQRQTNWIPI SWETSMGGPL GEVLHHSNNN 540 VADCKRSSAL NLMTAGWDSS PPLGSSPTGV LQKTTFGSLS NSSAGSSPRA DNHRTLEGAS 600 LCNDLGSTLV NSSSSLPAL

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MDFGVVGLDG LVGSEATGFS SLASDPETKQ KWYGSGLFKQ ERSSNSEDDW RSSKLLKTDD  60
FIASKTMQLQ HRNTLLRSNY TTLYSDGQQQ QQQMLSFSSP KSESFLAEKN SHNATLLPYF  120
HHSLSGYGKN TGYSSGSLNG TSMHGALAGA RGPFTPSQWM ELEHQALIYK YLTANMPVPS  180
NLLIPIRKAL DSAGFSSFPG GLLRPNTLGW GSFHLGFSNN TDPEPGRCRR TDGKKWRCSR  240
DAVADQKYCE RHMNRGRHRS RKPVEGQTGH AVSGTATTTA TTSTSTSSTI SKLSPIASSS  300
SASVVVPGGA SNSLAIAAHQ QLKNLQPGAS NPSAATTINR MFINKDNVGE RMQDTPGLSI  360
LSSSIDHKPK EDSFMIQKQQ IPYEESTRTE FGLVTSDALL NPSNKSSSLM NCSSQELSDR  420
RTESQQSLRH FIDDWPKIQS DRSSVSWPEL DMQSDRTQLS ISIPMASSDF ISSTSSPSSN  480
DKPALSPLRL SRELDPIRMG LGVSSIINEP NQRQTNWIPI SWETSMGGPL GEVLHHSNNN  540
VADCKRSSAL NLMTAGWDSS PPLGSSPTGV LQKTTFGSLS NSSAGSSPRA DNHRTLEGAS  600
LCNDLGSTLV NSSSSLPAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-103	GRF family protein